Re: [Freesurfer] segmentation protocol for the hippocampus

2008-06-26 Thread Bruce Fischl
Hi Nick, it's the protocol defined by the Center for Morphometric Analysis here at MGH. Dave Kennedy (ccd) can give you more details. cheers, Bruce On Thu, 26 Jun 2008, Nicolas Cherbuin wrote: Hi, Where can I find the protocol used to segment the hippocampus in freesurfer? I am comparing

Re: [Freesurfer] segmentation protocol for the hippocampus

2008-06-26 Thread Pedro Paulo de Magalhães Oliveira Junior
Hi Nicolas, This week in Brisbane you can find some of the developers of FreeSurfer to discuss this issue. My thoughts are: manually traced hippocampi is a still open problem. In 1.5T in a good quality SPGR or even in 3T it's a difficult task and many times very operator dependant. In FreeSurfer

[Freesurfer] segmentation protocol for the hippocampus

2008-06-25 Thread Nicolas Cherbuin
Hi, Where can I find the protocol used to segment the hippocampus in freesurfer? I am comparing manually traced hippocampi to fs segmentation and I am interested to know whether differences are due to the protocol used or other factors. Thanks Regards, Nic Nicolas Cherbuin