Re: [Freesurfer] setting the useRealRAS bit

2014-02-10 Thread Lilla Zollei
Doug, mris_convert does not read / write that information either. On Sun, 9 Feb 2014, Bruce Fischl wrote: > really? I didn't realize that as I don't use them much. Doug: do you have > something like MRISread? > > On Sun, 9 Feb 2014, Lilla Zollei wrote: > >> >> Those .m files only give me a set

Re: [Freesurfer] setting the useRealRAS bit

2014-02-09 Thread Douglas Greve
No I don't, I just used read_surf. Can mris_convert do it? On 2/9/14 3:15 PM, Bruce Fischl wrote: > really? I didn't realize that as I don't use them much. Doug: do you have > something like MRISread? > > On Sun, 9 Feb 2014, Lilla Zollei wrote: > >> Those .m files only give me a set of coordinat

Re: [Freesurfer] setting the useRealRAS bit

2014-02-09 Thread Bruce Fischl
really? I didn't realize that as I don't use them much. Doug: do you have something like MRISread? On Sun, 9 Feb 2014, Lilla Zollei wrote: > > Those .m files only give me a set of coordinates. They do not seem to be > accessing any matrices or the required bit. Should this information be > inc

Re: [Freesurfer] setting the useRealRAS bit

2014-02-09 Thread Lilla Zollei
Those .m files only give me a set of coordinates. They do not seem to be accessing any matrices or the required bit. Should this information be included at the beginning of each surface file? Lilla On Sun, 9 Feb 2014, Bruce Fischl wrote: > Hi Lilla > there is read_surf.m and write_surf.m, but

Re: [Freesurfer] setting the useRealRAS bit

2014-02-09 Thread Bruce Fischl
Hi Lilla there is read_surf.m and write_surf.m, but I guess you will need to figure out how to get the right ras2vox matrix into them cheers Bruce On Sun, 9 Feb 2014, Lilla Zollei wrote: > > Hi, > > I have some FS-style surface files that were created using outside tools > (from McGill). Due to

[Freesurfer] setting the useRealRAS bit

2014-02-09 Thread Lilla Zollei
Hi, I have some FS-style surface files that were created using outside tools (from McGill). Due to some recent changes in FreeView they do not display properly though as the useRealRAS bit in the header is not set to 1. Do we have any C / Matlab code that I could use to change that? Thanks, L