Re: [Freesurfer] severe recon-all errors only in v5.0

2010-11-22 Thread Bruce Fischl
Hi Andreas, if the surfaces and aseg are ok when the skull strip left stuff around, that should be fine. Not sure what's going on with the other one.Probably a topology problem. If you upload the subject we'll take a look Bruce On Mon, 22 Nov 2010, Andreas Berger wrote: > Hello Surfers, > > w

Re: [Freesurfer] severe recon-all errors only in v5.0

2010-11-22 Thread Andreas Berger
um, ok, everything (about 250mb) or just the 001.mgz? also, where do i send it? i think the mailing list doesn't like big attachments. thanks andreas On Mon, 22 Nov 2010 09:30:23 -0500 (EST) Allison Stevens wrote: > Andreas, > Could you send us one of these subjects so we can take a look? > A

Re: [Freesurfer] severe recon-all errors only in v5.0

2010-11-22 Thread Allison Stevens
Andreas, Could you send us one of these subjects so we can take a look? Allison -- On Mon, 22 Nov 2010, Andreas Berger wrote: > Hello Surfers, > > we just finished processing our subjects (recon-all -all) with freesurfer > version 5.0. In 16 out of 240 subjects i found severe errors: in about