Re: [Freesurfer] slice time correction before motion correction?

you mean with fsfast? No, not possible On 05/30/2018 11:50 AM, McMains, Stephanie wrote: > > Is there any way to do slice time correction prior to motion > correction, with SMS/multiband data? > > Thanks, > > Stephanie > > + > > Stephanie McMains > > Neuroimaging Staff Scient

[Freesurfer] slice time correction before motion correction?

Is there any way to do slice time correction prior to motion correction, with SMS/multiband data? Thanks, Stephanie + Stephanie McMains Neuroimaging Staff Scientist Center for Brain Science Harvard University 52 Oxford St. Cambridge, MA 02138 Phone: 617-529-1854 +

[Freesurfer] slice time correction in preproc-sess, stc.fsl and Analyze

Hi, I was trying to preprocess some data with the option of slice time correction but preproc-sess exited with the following error: preproc-sess -sf sessid -df sesspar -rlf runlistfile -sliceorder odd - fwhm 8 -update ... ... INFO: set hdr.hist.orient to -1 /Users/eiji

Re: [Freesurfer] Slice Time Correction Error

Dan, More information on the freesurfer installation is needed: - Is this running at the NMR center? if so, which machine and which freesurfer enviro (dev or stable) is in use? - If this is using a public distribution, which distribution was downloaded and on which OS was it installed? If the

[Freesurfer] Slice Time Correction Error

    Hi all,  We are trying to implement a slice-time correction ('stc-sess -i fmc -o fmcstc -so siemens -s FPPREW01 -d .') but we get the following error...  INFO: set hdr.hist.orient to -1 /net/tucson/Raid/shared/exp/REfMRI/fMRI_FPPREW/functional slicetimer -i /net/tucson/Raid/shared

[Freesurfer] Slice Time Correction Error

Hi all, We are trying to implement a slice-time correction ('stc-sess -i fmc -o fmcstc -so siemens -s FPPREW01 -d .') but we get the following error... INFO: set hdr.hist.orient to -1 /net/tucson/Raid/shared/exp/REfMRI/fMRI_FPPREW/functional slicetimer -i /net/tucson/Raid/shared/exp/REfMRI/f

Re: [Freesurfer] slice time correction?

You can run it with stc-sess (this is a frontend for FSL's slicetimer). You can pick the slice order with -so. If it's interleaved and from a siemens scanner, then just specify "siemens" as the slice order. Run it with -help for more info. doug On Mon, 31 Jul 2006 [EMAIL PROTECTED] wrote:

[Freesurfer] slice time correction?

Hi all, I was wondering if fs-fast implements slice time correction at any point during processing? if so does it default to correction for either interleaved or linear acquisition and can this be modified? Thanks, Cameron ___ Freesurfer mailing list Free