Re: [Freesurfer] stripping MP-RAGEs from Allegra

2006-07-10 Thread Bruce Fischl
you mean the coefficients from Siemens? Actually Jenni has had a lot of recent experience messing around with Allegra data. If you want to put one on the file drop we'll take a look (do they look okay?) Bruce On Mon, 10 Jul 2006, Russell Poldrack wrote: not yet - we are working on getting t

Re: [Freesurfer] stripping MP-RAGEs from Allegra

2006-07-10 Thread Russell Poldrack
not yet - we are working on getting the coordinates on this end to do that, so we should hopefully be able to do so fairly soon.cheersrpOn Jul 10, 2006, at 5:01 PM, Bruce Fischl wrote:Hi Russ,are you gradient unwarping them?BruceOn Mon, 10 Jul 2006, Russell Poldrack wrote: hi - I've been trying to

Re: [Freesurfer] stripping MP-RAGEs from Allegra

2006-07-10 Thread Bruce Fischl
Hi Russ, are you gradient unwarping them? Bruce On Mon, 10 Jul 2006, Russell Poldrack wrote: hi - I've been trying to run a set of MP-RAGE images collected on our allegra through the first part of the autorecon process, and I've run into somewhat of a problem with the skull-stripping. In all

[Freesurfer] stripping MP-RAGEs from Allegra

2006-07-10 Thread Russell Poldrack
hi - I've been trying to run a set of MP-RAGE images collected on our allegra through the first part of the autorecon process, and I've run into somewhat of a problem with the skull-stripping. In all 8 of the brains that I have tried, there is a substantial amount of scalp left over after stripping