I think you are right, the auto skull stripping probably didn't quite do
the job. We are working on trying to skull strip the dicoms manually before
starting over again. In the meantime, I uploaded the lh-inflated (that
seems to be the only one in the subjects/[SUBJECT]/surf/ folder).
Thanks
O
Hi Eli
I think that defect is simply too big (it would take forever to fix). It's
more than half of the size of a typical cortical hemisphere model. Did you
check the skull stripping? And send us images (medial and lateral) of the
?h.inflated.nofix in tksurfer
cheers
Bruce
On Thu, 28 Feb 20
Hi all,
I have been trying to run freesurfer on a case for awhile now. After
receiving multiple errors when using the skull stripped nifti (nii.gz)
file, I tried to use the original dicoms as the input. While I haven't run
into any errors, the process seems to have frozen at "CORRECTING DEFECT 4
