Re: [Freesurfer] surf2vol from annotation?

2020-08-17 Thread Douglas N. Greve
On 8/13/2020 10:15 AM, Ellen Ji wrote: External Email - Use Caution Thanks Douglas. recon-all was performed using FS V6. However, we have since upgraded to V7. Should I stick with what was originally used (mri_aparc2aseg)? I don't think it will make much of a difference, so do

Re: [Freesurfer] surf2vol from annotation?

2020-08-13 Thread Douglas N. Greve
You can look in the recon-all.log file to see how wmparc.mgz is created. Which version of FS are you using?  If V6, then the command will be mri_aparc2aseg. If V7, then it will mri_surf2volseg. Either way, modify the command to use your annotation. On 8/12/2020 5:18 AM, Ellen Ji wrote: