The .lta file will not be changed in that command line (only the reg),
you need to add --ltaout talairach.lta
If you re-run, remove the --lta and it will load the --reg which you can
then save back to talaairach.lta with the --ltaout flag.
Having said that, recon-all will actually overwrite your
Hello freesurfers,
I recently attempted to fix the talairach.lta file from a bad recon-all
run for one of my subjects. I originally thought that the second pass of
recon-all would automatically load this talairach file. However, it looks
like the talairach alignment keeps restarting each time
