Re: [Freesurfer] tkregister2 - horizontal and coronal inverted in the functional only

2016-02-08 Thread Ilaria Sani
Sent: Sunday, February 7, 2016 10:44 PM On 2/5/16 12:49 PM, Ilaria Sani wrote: Dear All, I have a functional and a T1 registered, but they are not in anatomical coordinates. Do you mean neither are in the "conformed" 256^3, 1mm^3 FreeSurfer coordinates? Both the T1 and the functional are "confo

Re: [Freesurfer] tkregister2 - horizontal and coronal inverted in the functional only

2016-02-07 Thread Douglas Greve
On 2/5/16 12:49 PM, Ilaria Sani wrote: Dear All, I have a functional and a T1 registered, but they are not in anatomical coordinates. Do you mean neither are in the "conformed" 256^3, 1mm^3 FreeSurfer coordinates? I put the anatomical in the desired position by using tkregister2. Was the T1

[Freesurfer] tkregister2 - horizontal and coronal inverted in the functional only

2016-02-05 Thread Ilaria Sani
Dear All, I have a functional and a T1 registered, but they are not in anatomical coordinates. I put the anatomical in the desired position by using tkregister2. I was hoping to use the output reg file to re-position the functional as well. I got an unexpected output! The functional looks reorie