Re: [Freesurfer] tksurfer problem - annotation of vertices

2013-08-04 Thread Douglas Greve
what is the actual problem? Most of the vertices will not have an annotation because you are looking at an annotation of clusters from a statistical analysis. doug On 7/31/13 9:46 AM, Sinead Kelly wrote: Dear freesurfer users, I am having a problem visualizing results using tksurfer

[Freesurfer] tksurfer problem - annotation of vertices

2013-07-31 Thread Sinead Kelly
Dear freesurfer users, I am having a problem visualizing results using tksurfer using the following command: tksurfer fsaverage lh inflated -annot lh.MIR137_area.glmdir/MIR137_test/mc-z.abs.sig.ocn.annot -fthresh 2 -curv -gray Please also see the terminal output stating that the vertices do not

[Freesurfer] tksurfer problem and solution

2010-02-11 Thread David Mischel
We have had similar problems with displays of tksurfer described in http://surfer.nmr.mgh.harvard.edu/fswiki/TksurferDisplayProblems. I would like to try freeview, the new solution for display. I don't know anything about freeview and no one here has ever used it. To run tksurfer I set the

[Freesurfer] tksurfer problem

2009-08-13 Thread sina zarei
Hello I am not able to see the surface by running tksurfer bert lh pial. I receive the error surfer: ### redraw failed: no gl window open. I have tried export doublebufferflag=1. Mesa is installed and updated. Linux ATI drivers is installed. Os: Fedora 11 Graphics: ATI RV515 X1300. I have tried

Re: [Freesurfer] tksurfer problem

2006-10-18 Thread Nick Schmansky
Ran, To solve this problem, upgrade your NVIDIA graphics driver. I'm not sure what the source of this problem is, but I have seen it before, and upgrading the driver seems to fix it. Nick On Tue, 2006-10-17 at 23:55 -0600, Ran Tao wrote: Hi, I have a problem about tksurfer command. After