Re: [Freesurfer] topological defect error

2019-12-05 Thread Bruce Fischl
Fischl Sent: Thursday, December 5, 2019 3:40 PM To: Laurel Quinlan Cc: Freesurfer support list Subject: Re: [Freesurfer] topological defect error   Hi Laurel do you want to upload this subject to our ftp site and we can take a look? Alternatively you can overlay the wm.mgz as a heatmap on top of

Re: [Freesurfer] topological defect error

2019-12-05 Thread Bruce Fischl
From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Bruce Fischl Sent: Tuesday, December 3, 2019 11:57 AM To: Freesurfer support list Subject: Re: [Freesurfer] topological defect error   it might also be the hemispheres not being separated, hard to tell (although that almost never happens)

Re: [Freesurfer] topological defect error

2019-12-03 Thread Bruce Fischl
it might also be the hemispheres not being separated, hard to tell (although that almost never happens). You can look at the filled.mgz to check this (the hemis should have different labels) On Tue, 3 Dec 2019, Greve, Douglas N.,Ph.D. wrote: Look at the lh.orig.nofix and see if you can find t

Re: [Freesurfer] topological defect error

2019-12-03 Thread Greve, Douglas N.,Ph.D.
Look at the lh.orig.nofix and see if you can find the defect. Also, look at it in the volume and the surface views. Might be cerebellum On 12/3/2019 11:30 AM, Laurel Quinlan wrote: External Email - Use Caution Hi Freesurfer Support, One of my colleagues receives the following error aft