Re: [Freesurfer] trac-all -prep exited with errors

2013-03-22 Thread Anastasia Yendiki
i" > To: "Jon Wieser" > Cc: freesurfer@nmr.mgh.harvard.edu > Sent: Friday, March 22, 2013 4:19:57 PM > Subject: Re: [Freesurfer] trac-all -prep exited with errors > > > It will, unless it doesn't find the anatomical segmentation of the subject > ($SUBJECTS_DIR/$subj/

Re: [Freesurfer] trac-all -prep exited with errors

2013-03-22 Thread Anastasia Yendiki
freesurfer/dlabel/anatorig directory? > > > I will try running trac-all again > Jon > > > - Original Message - > From: "Anastasia Yendiki" > To: "Jon Wieser" > Cc: freesurfer@nmr.mgh.harvard.edu > Sent: Friday, March 22, 2013 2:23:10 PM

Re: [Freesurfer] trac-all -prep exited with errors

2013-03-22 Thread Anastasia Yendiki
the entire freesurfer directory has read,write, and executable permission > > Jon > > > - Original Message - > From: "Anastasia Yendiki" > To: "Jon Wieser" > Cc: freesurfer@nmr.mgh.harvard.edu > Sent: Friday, March 22, 2013 1:06:22 PM > Subject:

Re: [Freesurfer] trac-all -prep exited with errors

2013-03-22 Thread Anastasia Yendiki
inal Message - > From: "Anastasia Yendiki" > To: "Jon Wieser" > Cc: "freesurfer" > Sent: Friday, March 22, 2013 11:49:35 AM > Subject: Re: [Freesurfer] trac-all -prep exited with errors > > > Hi Jon - Can you please send all of trac-al

Re: [Freesurfer] trac-all -prep exited with errors

2013-03-22 Thread Anastasia Yendiki
Hi Jon - Can you please send all of trac-all.log? Sometimes there are hints earlier than where the error actually occurs. Thanks, a.y On Fri, 22 Mar 2013, Jon Wieser wrote: > Hi > I ran trac-all -prep -c dmrirc_single_subject > and got the following error: > > here's the end of the output from

[Freesurfer] trac-all -prep exited with errors

2013-03-22 Thread Jon Wieser
Hi I ran trac-all -prep -c dmrirc_single_subject and got the following error: here's the end of the output from trac-all: RegMat --- 1.000 -0.016 -0.000 4.210; 0.000 -0.005 1.000 2.417; -0.016 -1.000 -0.005 0.018; 0.000 0.000 0.000 1.000; FSLOUTPUTT