Re: [Freesurfer] trac all -p

2015-02-26 Thread Alan Francis
Thanks Anastasia. Your suggestion worked. On Wed, Feb 25, 2015 at 4:10 PM, Anastasia Yendiki < ayend...@nmr.mgh.harvard.edu> wrote: > > Hi Alan - It can't find the file. Check the error message, part of the > path to the file is repeated twice. I suspect you typed that part in both > dcmroot and

Re: [Freesurfer] trac all -p

2015-02-25 Thread Anastasia Yendiki
Hi Alan - It can't find the file. Check the error message, part of the path to the file is repeated twice. I suspect you typed that part in both dcmroot and dcmlist. a.y On Wed, 25 Feb 2015, Alan Francis wrote: Hi Anastasia: I have run trac-all  using the following command: trac-all -prep

[Freesurfer] trac all -p

2015-02-25 Thread Alan Francis
Hi Anastasia: I have run trac-all using the following command: trac-all -prep -c /data/alanf/FreeSurfer_5.3/diffusion_recons/dmrirc-101309 However, I get an error message which is as follows: INFO: SUBJECTS_DIR is /data/alanf/FreeSurfer_5.3/diffusion_recons INFO: Diffusion root is /data/alanf