[Freesurfer] trouble with tracula preprocessing step

2012-12-17 Thread s0675204
Hello I have one more problem. Some of the subjects completed step 1 (preprocessing) successfully according to the logs & there are no error messages. However, when I try to run the bedpost step on these subjects, I get an error message saying there is no data.nii.gz file in the dmrirc There is ho

Re: [Freesurfer] trouble with tracula preprocessing step

2012-12-20 Thread Anastasia Yendiki
Hi Prerona - I think this is explained in the archives on the same thread as the bedpostx upgrade issue. If you run bedpostx outside of trac-all, you should create dmri/data.nii.gz as a symbolic link to dmri/dwi.nii.gz and dmri/nodif_brain_mask.nii.gz as a symbolic link to whichever brain mas