Re: [Freesurfer] using -nuintensitycor-3T flag with v-5.0.0

2010-08-18 Thread Nick Schmansky
1. correct, or more easily, you can just run: recon-all -s -all -nuintensitycor-3T 2. correct, there are no parameters with that flag. that flag itself adjusts the parameters to nucorrect (which will match those described in the paper linked in the release notes). let us know if it improves yo

[Freesurfer] using -nuintensitycor-3T flag with v-5.0.0

2010-08-17 Thread Mehul Sampat
Hi Folks, I would like to use the -nuintensitycor-3T flag as listed in the release notes (http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes) I had two questions about this new option: 1. Can I just use this as follows: recon-all -s bert -autorecon1 -autorecon2 -nuintensitycor-3T (then run -aut