If you had 5.3 in addition to 4.5, you could run the following command
for each subject
cd $SUBJECTS_DIR/yoursubject
mri_segstats --seg mri/aseg.mgz --sum stats/aseg.53.stats --pv
mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg
--excludeid 0 --excl-ctxgmwm --supratent
Dear all,
I've been using Freesurfer v4.5.0 for some time and have reconned about 100
participants. I am wondering if there is an automatic way to obtain the
total gray matter volume for all the subjects I have run so far under this
version, or would it be necessary to update to v5.2?
Any help wo
