Re: [Freesurfer] viewing certain regions

2014-04-22 Thread Douglas N Greve
HI Courtney, please post to the list. Thanks! Get the codes from $FREESURFER_HOME/FreeSurferColorLUT.txt. Also, you can use multiple numbers to match all the ROIs you want at once (if that is what you want). Eg, --match 2 26 17 doug On 04/22/2014 03:16 PM, Courtney Haswell wrote: > Thanks f

Re: [Freesurfer] viewing certain regions

2014-04-22 Thread Douglas N Greve
Use mri_binarize with the --match option to create a mask of the regions you want. Then use mri_mask applied to aparc+aseg to create a new volume with only the regions you want doug On 04/22/2014 09:06 AM, Courtney Haswell wrote: > Hi! > > I want to view only certain segmented regions on one o

[Freesurfer] viewing certain regions

2014-04-22 Thread Courtney Haswell
Hi! I want to view only certain segmented regions on one of our subject's brains. It seems like it should be simple but I am struggling to find the steps. I want to display only hippocampus, amygdala, medial orbitofrontal, lateral orbitofrontal, sulcus/gyri anterior cingulate, subcallosal gyrus, a