Re: [Freesurfer] white matter ROI mask using an fsaverage label

2017-08-14 Thread Douglas N Greve
you can use mri_aparc2aseg. Look in the recon-all.log file of an individual for the command used to generate the wmparc.mgz. On 08/01/2017 04:43 PM, Eryilmaz, H. Hamdi wrote: > Hi Anastasia and FS experts, > > I am trying to create a white matter ROI mask underneath a cortical > ROI label (e.g

[Freesurfer] white matter ROI mask using an fsaverage label

2017-08-01 Thread Eryilmaz, H. Hamdi
Hi Anastasia and FS experts, I am trying to create a white matter ROI mask underneath a cortical ROI label (e.g., 2 mm into the white matter) created in fsaverage space. I will then use this mask to extract values from individual dtifit_FA and dtifit_MD maps generated by trac-all. What would be