Dear Eli,
did you read my response to your previous thread?
I recommended you to try adding control points to the white matter.
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg51959.html
Regards,
Antonin
Hello all,
Again, I tried to modify the white matter surface by adding vox
Hello all,
Again, I tried to modify the white matter surface by adding voxels to
the wm.mgz file, and performed the reconstruction by doing the
following.
-Opened brainmask.mgz for reference
-Opened wm.mgz on top of that
-Click the voxel edit button
-Check the recon editing checkbox
-Fill in voxe
>
> Message: 4
> Date: Wed, 1 Mar 2017 16:39:33 -0500 (EST)
> From: Bruce Fischl
> Subject: Re: [Freesurfer] wm.mgz manual editing
> To: Freesurfer support list
> Message-ID:
>
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__alpine.LRH.2.20.1703
surf+wm.tar.gz
https://1drv.ms/u/s!AoOsIIayCH7qlxbDSS54gfHkq2M3
Thanks tremendously for your time,
Eli
> --
>
> Message: 4
> Date: Wed, 1 Mar 2017 16:39:33 -0500 (EST)
> From: Bruce Fischl
> Subject: Re: [Freesurfer] wm.mgz manual editing
>
surf+wm.tar.gz
https://1drv.ms/u/s!AoOsIIayCH7qlxbDSS54gfHkq2M3
Thanks tremendously for your time,
Eli
> --
>
> Message: 4
> Date: Wed, 1 Mar 2017 16:39:33 -0500 (EST)
> From: Bruce Fischl
> Subject: Re: [Freesurfer] wm.mgz manual editing
>
Hi Eli
hmm, maybe you should just upload the subject and email us the voxel
coords you are talking about?
Also, in general it is hard for us to help you unless you include more
information. What exact command did you run? What was the screen output?
What was in the recon-all.log?
cheers
Br
Couple of questions:
1)
I edited wm.mgz following the instructions in the wiki guide, but it did
not change anything after reconstruction. I am still using 5.3 right
now, so maybe the guide is wrong for me. What is the brush value
supposed to be? I used 255 but it did not extend the white matter
