RE: [Freesurfer] A problem occurred while running recon-all in the new dev version

2005-09-21 Thread Nick Schmansky
> 10:14:18] running: > /usr/pubsw/packages/mni/current/bin/nu_estimate_np_and_em -parzen -log > -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify > -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir > /usr/tmp/nu_correct_7260/ nu0.

RE: [Freesurfer] A problem occurred while running recon-all in the new dev version

2005-09-21 Thread Hsu, Shen-Mou
ted with errors at Wed Sep 21 10:14:18 EDT 2005 -Original Message- From: Brian T. Quinn [mailto:[EMAIL PROTECTED] Sent: Wed 9/21/2005 10:01 AM To: Hsu, Shen-Mou Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] A problem occurred while running recon-all in the new dev version

Re: [Freesurfer] A problem occurred while running recon-all in the new dev version

2005-09-21 Thread Brian T. Quinn
try renaming the .mgz volume (Sub05.mgz) in orig with a 3 digit zero padded number such as 001.mgz thanks, brian On Wed, 21 Sep 2005, Hsu, Shen-Mou wrote: Hi! I am running the freesurfer on redhat 9 with the latest release (freesurfer-Linux-rh9-dev20050915-full.tar.gz.) Unfortunately, while