Re: [Freesurfer] FreeSurfer atlases

2024-06-28 Thread Fischl, Bruce R.,PHD
@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] FreeSurfer atlases Try looking at it in freeview first. Some of the regions may be small, so you may have to hunt to get them. FYI you can specify nii as the output of mri_binarize On 6/28/2024 5:30 AM, Savoia, Alice (Stud. FPN) wrote: External Email - Use

Re: [Freesurfer] FreeSurfer atlases

2024-06-28 Thread Douglas N. Greve
have suggestions? Thanks, Alice *From:* freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve *Sent:* Thursday, June 27, 2024 12:36 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] FreeSurfer atlases I'm not sure wha

Re: [Freesurfer] FreeSurfer atlases

2024-06-28 Thread Savoia, Alice (Stud. FPN)
to open the mask in FSL I cannot visualize them. Does anyone have suggestions? Thanks, Alice From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve Sent: Thursday, June 27, 2024 12:36 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesur

Re: [Freesurfer] FreeSurfer atlases

2024-06-26 Thread Douglas N. Greve
I'm not sure what you mean. We don't have an image of the subfields in, eg, mni space. Usually, you just run the subfield seg on the data that you want subfields for On 6/26/2024 7:58 AM, Savoia, Alice (Stud. FPN) wrote: External Email - Use Caution Hello, I am looking for a freesufe

Re: [Freesurfer] freesurfer atlases/versions

2012-12-28 Thread Christophe Destrieux
Hi Narly You are right: The anatomical parcellation is the same (aparc.a2009s) as the one included in the 4.5 FS version (see also http://surfer.nmr.mgh.harvard.edu/fswiki/DestrieuxAtlasChanges). Cheers -- Christophe - Mail original - > De: "Narly Golestani" > À: freesurfer@nmr.mg