Re: [Freesurfer] Wm correction

sure, let us know after you have uploaded it. Bruce On Fri, 29 Jan 2016, maryam koochaki wrote: Thanks, I also have another major problem with the subjects I am working on. Two of the subjects intend to freeze at #@# Fix Topology rh step while running reconstruction process. CORRECTING

Re: [Freesurfer] Wm correction

Hi Bruce,I uploaded yesterday. best, Maryam   Regards,Maryam Kouchakidivkolaei On Friday, January 29, 2016 5:47 AM, Bruce Fischl wrote: sure, let us know after you have uploaded it. Bruce On Fri, 29 Jan 2016, maryam koochaki wrote: > Thanks, I also

Re: [Freesurfer] Wm correction

Hi Bruce,Thanks for your reply, I will take look on aseg volume. Best,Mrayam   On Thursday, January 28, 2016 5:55 AM, Bruce Fischl wrote: Hi Maryam have you look at the aseg? I suspect that it didn't properly handle the very large ventricles in this

Re: [Freesurfer] Wm correction

Hi Bruce, How can I download version 6? Best,Maryam   Regards,Maryam Kouchakidivkolaei On Thursday, January 28, 2016 5:55 AM, Bruce Fischl wrote: Hi Maryam have you look at the aseg? I suspect that it didn't properly handle the very large ventricles

Re: [Freesurfer] Wm correction

Thanks, I also have another major problem with the subjects I am working on.Two of the subjects intend to freeze at #@# Fix Topology rh step while running reconstruction process. CORRECTING DEFECT 12 (vertices=29993, convex hull=7603) I will upload one of the subjects to your ftp site, if you

Re: [Freesurfer] Wm correction

Hi Maryam We are working hard to get it out, but it's not quite ready yet. We will make an announcement when we have a beta version Bruce > On Jan 28, 2016, at 8:25 PM, maryam koochaki > wrote: > > Hi Bruce, > How can I download version 6? > > > Best, > Maryam >

Re: [Freesurfer] Wm correction

Hi Maryam have you look at the aseg? I suspect that it didn't properly handle the very large ventricles in this subject. Try manually editing it. V6 handles this kind of thing significantly better cheers Bruce On Thu, 28 Jan 2016, maryam koochaki wrote: Hi Bruce, I am editing a brain

Re: [Freesurfer] wm correction issues

Hi there. we have been doing some white matter corrections, based on the wiki instructions. After filling in some missing voxels we ran ...autorecon2-wm autorecon3 ... but it doesn't look like the white matter was corrected. thanks ilana -- *** Ilana

Re: [Freesurfer] wm correction issues

Hi Ilana, we need more information if we are to help you. What kind of corrections? What commands did you run? What did the output look like? cheers Bruce On Fri, 21 May 2010, Ilana Hairston wrote: Hi there. we have been doing some white matter corrections, based on the wiki instructions.

Re: [Freesurfer] wm correction issues

And what version of freesurfer are you using? On May 21, 2010, at 11:21 AM, Bruce Fischl fis...@nmr.mgh.harvard.edu wrote: Hi Ilana, we need more information if we are to help you. What kind of corrections? What commands did you run? What did the output look like? cheers Bruce On