[galaxy-dev] March 2011 GMOD Meeting: Registration is open

2011-01-31 Thread Dave Clements
Hello all, Registration is now open for the March 2011 GMOD Meeting ( http://gmod.oicr.on.ca/wiki/March_2011_GMOD_Meeting). This meeting is part of GMOD Americas 2011, an event that includes a day of Satellite Meetings, a GMOD Course (ialready full), and for the first time, an "Introduction to GMO

Re: [galaxy-dev] January 31, 2011 Galaxy Development News Brief

2011-01-31 Thread Florent Angly
Thanks for the update! I noticed that some work was done on the workflows, so I tried running one again. However this core feature still does not work for me: https://bitbucket.org/galaxy/galaxy-central/issue/434/error-listing-workflows That's using PostgreSQL on a computer running Mac OS

Re: [galaxy-dev] Question about GC

2011-01-31 Thread Enis Afgan
Hi Xiandong, Yes, it is possible to run a customized Galaxy instance and also use your own tools on the cloud but there is a bit of a process. Namely, you will need to install the tools by hand, create required EBS volume snapshots, and changing some configuration files in your cluster's S3 buc

[galaxy-dev] January 31, 2011 Galaxy Development News Brief

2011-01-31 Thread Jennifer Jackson
January 31, 2011 Galaxy Development News Brief http://bitbucket.org/galaxy/galaxy-central/wiki/Features/DevNewsBrief/2011_01_31 Get Galaxy! http://bitbucket.org/galaxy/galaxy-central/wiki/GetGalaxy * new: % hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist * upgrade: % hg pull -u -r

[galaxy-dev] how to set the width of drop down menu

2011-01-31 Thread Enhai Xie
Hi All, Is there anyone who knows how to adjust the sizes of drop downs in Galaxy?. In other words, we want to set the width of drop down menu and how to do it? Thanks. __Enhai ___ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.p

Re: [galaxy-dev] Workflow steps collapsible to just title bar

2011-01-31 Thread Peter Cock
On Mon, Jan 31, 2011 at 5:59 PM, Dannon Baker wrote: > On Jan 31, 2011, at 11:34 AM, Peter Cock wrote: >> I may have found a bug though - I have several workflows using my SignalP >> wrapper, which has a select parameter for model type. This has been marked >> as to be set at runtime in the workfl

Re: [galaxy-dev] [galaxy-user] Peep view for history elements broken on IE?

2011-01-31 Thread Peter
On Mon, Jan 31, 2011 at 5:54 PM, Leandro Hermida wrote: > Hi, > > In IE go to Tools -> Internet Options -> Advanced Tab, then under Browsing > section: > > Uncheck "Disable Script debugging (Internet Explorer) > Uncheck "Disable Script debugging (Other) > Check Display a notification about every s

Re: [galaxy-dev] Workflow steps collapsible to just title bar

2011-01-31 Thread Dannon Baker
On Jan 31, 2011, at 11:34 AM, Peter Cock wrote: > I may have found a bug though - I have several workflows using my SignalP > wrapper, which has a select parameter for model type. This has been marked > as to be set at runtime in the workflow, but the workflow step using > this tool is > being show

Re: [galaxy-dev] [galaxy-user] Peep view for history elements broken on IE?

2011-01-31 Thread Leandro Hermida
Hi, In IE go to Tools -> Internet Options -> Advanced Tab, then under Browsing section: - Uncheck "Disable Script debugging (Internet Explorer) - Uncheck "Disable Script debugging (Other) - Check Display a notification about every script error Then you will see the Javascript error when

Re: [galaxy-dev] NCBI BLAST+ wrappers in Galaxy?

2011-01-31 Thread Peter
On Wed, Jan 5, 2011 at 9:07 PM, Daniel Blankenberg wrote: > Hi Peter, > > We had some discussion today about Kanwei's email and opted for the > nicer looking access method. I've added a note to the ToolConfigSyntax > wiki page about special characters. > > Thanks, > > Dan Thanks Dan, Kanwei - co

Re: [galaxy-dev] Workflow steps collapsible to just title bar

2011-01-31 Thread Peter Cock
On Wed, Jan 26, 2011 at 4:41 PM, Dannon Baker wrote: > Thanks for the feedback, glad you like it.  A visual indicator is forthcoming; > I just haven't decided on one and wanted to go ahead and push the >functionality. > > -Dannon It looks better now with the step name clearly shown as a link :)

Re: [galaxy-dev] attribute holding history dataset number

2011-01-31 Thread Nate Coraor
Leandro Hermida wrote: > H Nate, > > Where can I find the wiki page which lists all of the attributes available > for tool objects? (e.g. input params, ouput, etc.) Hi Leandro, I don't believe there is one, but perhaps someone else on the Team will correct me if I'm wrong. --nate > > best, >

Re: [galaxy-dev] [galaxy-user] Peep view for history elements broken on IE?

2011-01-31 Thread Peter
> On Thu, Jan 27, 2011 at 6:07 PM, Kanwei Li wrote: >> >> Weird.. the proxy shouldn't be relevant. Could you open the javascript >> error console and see what the error is? >> OK - but how? There is no sign of a javascript error... I've been to menu Tools / Internet Options... / Advanced tab, th

Re: [galaxy-dev] [galaxy-user] Peep view for history elements broken on IE?

2011-01-31 Thread Leandro Hermida
Hi everyone, I posted a similar thread back in August http://lists.bx.psu.edu/pipermail/galaxy-dev/2010-August/003224.html There are a couple web UI issues with Galaxy when using IE, like as mentioned in this thread in the history pane data items the link is missing and you cannot expand them to