Hi Everyone,
I'm having trouble getting some of the tools to work on my local installation
of Galaxy on a Mac (OS X version 10.6.7). The instructions on the GetGalaxy
wiki are clear, and I was able to download and install from the anonymous
Mercurial repository. Galaxy starts up and runs jus
Marc,
What you're seeing is likely Galaxy setting metadata like line counts, etc.
One first step would be to check your datatypes_conf.xml and look for the
attribute max_optional_metadata_filesize. You can set this on a per-filetype
basis, or, if you'd like to set it for everything, you could
2011/4/22 liyanhui607 :
> Dear Sir,
> We have a program writen in C lanuage. It can run nomally in linux
> environment.
> We plan to add it to galaxy, but it did not work.
> The C file after complie named "shortest-path"
> The shortest-path.xml is as fol
Hi All,
I use Galaxy on a compute cluster and each job is launch in a node.
When I launch a workflow and when it generates very huge files (some
Go), the job finish (I can see that with 'qstat' command) but Galaxy
takes several minutes (or some hours !!) to display a green Box in history.
It s
Without seeing an error message I'll guess that issue is that there is no C
interpreter. Your program is a compiled executable.
Try the following and let me know (including any error messages) if it doesn't
work:
shortest_path $infile1 $output
-Dannon
On Apr 22, 2011, at 2:12 AM, liya
Dear Sir,
We have a program writen in C lanuage. It can run nomally in linux
environment.
We plan to add it to galaxy, but it did not work.
The C file after complie named "shortest-path"
The shortest-path.xml is as follow:
Could anybody tell m
On Thu, Apr 14, 2011 at 5:38 PM, Peter Cock wrote:
> Hi all,
>
> I just wanted to mention (to avoid duplicate work) that I have a working
> Galaxy wrapper for NLStradamus v1.6, a tool for prediction of nuclear
> localization signals (NLSs) from a protein FASTA file. The wrapper
> does a little refo
On Thu, Apr 21, 2011 at 9:27 PM, Assaf Gordon wrote:
> Peter Cock wrote, On 04/21/2011 12:59 PM:
>> On Thu, Apr 21, 2011 at 5:43 PM, Assaf Gordon wrote:
>>
>> I know nice isn't perfect, but in the case of the sys admin setting
>> up Galaxy, we don't have the human laziness problem to overcome:
>>
