Hi Ryan
Our sysadmin spent quite some time on this problem...in the end, he gave
up and installed R 2.9.0 on our new server.
So, we ended up with two versions of R: one is used for rpy (we define:
"R_HOME=/***/***/galaxy/helpers/R/R-2.9.0" in the 'run.sh' script), and
an up-to-date version of
Hello
We would like to force users to register even when they successfully
pass through our University's single sign-on service (Apache + cosign).
We have:
use_remote_user = True
allow_user_creation = False
in the universe_wsgi.ini, but it appears that use_remote_user takes
precedence over
Hello,
I am exploring the possibility of using a local galaxy installation for light
bioinformatics on sequence data in the scope of an existing LIMS system.
Ideally I would like to be able to do the following
1. Push datasets from the LIMS to galaxy (directly into the user's account
or i
Hi,
I recently downloaded galaxy and had some problems installing it on my machine
(running Mac OSX 10.6.7 ). I've found a workaround to my problem, but I
thought I should post here in case it is useful.
I obtained the standard galaxy distribution using
hg clone https://bitbucket.org/galax
Thank you Marco and Hans for your solutions. I installed the R-devel and it
fixed the issues. I now have R 2.12.2 and rpy 1.0.3 running smoothly.
Thanks!
From: Marco Moretto [mailto:marco.more...@gmail.com]
Sent: Tuesday, June 21, 2011 11:49 PM
To: Ryan Davis
Cc: galaxy-dev@lists.bx.psu.edu
Hi Ira,
This has been reported before as well, but should be fixed without having to
rescramble when we release our next dist-release soon.
Thanks,
K
On Wed, Jun 22, 2011 at 12:47 AM, Ira Cooke wrote:
> Hi,
>
> I recently downloaded galaxy and had some problems installing it on my
> machine (
On Jun 20, 2011, at 4:10 PM, Shantanu Pavgi wrote:
>
> On Jun 20, 2011, at 2:40 PM, Nate Coraor wrote:
>
>> Shantanu Pavgi wrote:
>>> Hi,
>>>
>>> We have a galaxy server setup using external shibboleth authentication.
>>> While we would like to have site behind authentication realm, there are
Hi,
I have setup 'user_library_import_dir' to allow non-admin users to import data
libraries. The configured directory contains subdirectories with galaxy-login
(email) name. I couldn't figure out how to view these files in galaxy web
interface though. Any help? Also, what filesystem permissi
Hi Russell,
Dan Blankenberg is our ChIP-seq expert and will be able to work with you
when he returns from vacation.
Thank you for your patience!
Best,
Jen
Galaxy team
On 6/20/11 2:22 PM, Russell Bonneville wrote:
Hello all,
I am Russell, a student working with Dr. Victor Jin at the Dept.
Hi,
The galaxy dataset files (file_path) are arranged within a subdirectory '000'
(database/files/000). Will galaxy create a new subdirectory for storing
datasets files after certain file count value is reached(say ~ 1000)? It may
not be a problem while using web interface, but I am wondering i
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