Hi All,
I'm getting this error "*Job output not returned from cluster*"
galaxy.jobs.runners.drmaa DEBUG 2011-07-26 17:00:59,552 (4915/17234) state
change: job is queued and active
galaxy.jobs.runners.drmaa DEBUG 2011-07-26 17:01:03,552 (4915/17234) state
change: job is running
139.80.26
I am still working on the patch to submit jobs as the actual user under SGE . I
have it working for the default case but it fails for the case of
set_metadata_externally = TRUE. Can someone point me to where the metadata
files are created so that I can change the permissions for those files?
A
Hello,
I have been working on running a workflow programmatically on my local
galaxy instance using library datasets.
It took me a few hours to figure out the problem I was having so I thought I
would document it here in case it helps anyone. Also, I have a question
regarding 'ldda' IDs (see below
I am doing an integration with Galaxy, and part of what I need to do is trigger
workflows. To do that, I need to list them.
I can do this if the user owns the workflows, but the API does not return
workflows that have been shared with the user.
Is there a way via the API to discover the sharing
Hi Greg,
this was indeed causing the problem. I added some code which now allows to
sniff image files. It is practically untested (it does work for me on bmp,
jpg, png, tiff) - didn't try with PIL although the code is there.
Attached are diffs against changeset 058a5d7a4f84 (bit outdated - can
pro
Hello Indresh,
Apologies for the delay in reply, please see below:
On 7/13/11 1:55 PM, Singh, Indresh wrote:
Greetings,
We installed Galaxy at JCVI for internal user but we are discovering
that we are missing lots of third party tools/dependencies. My question;
is there any script/tool that we
Hi Jeremy,
I updated my local Galaxy and see items in the Saved Histories display
normally. Thank you so much for the fix. Excellent work.
Jack
On 21 July 2011 10:07, Jeremy Goecks wrote:
> Jack,
> Thanks for following up on this issue. I've fixed the problem in
> galaxy-central
> changes
Ignore previous email, I found the error, it was not a Galaxy problem
Thanks
Shaun
Quoting SHAUN WEBB on Mon, 25 Jul 2011
11:21:43 +0100:
Hi all,
I'm getting the following error running a custom tool. I'm not
really sure where the problem is coming from, it doesn't happen
every tim
Hi all,
I'm getting the following error running a custom tool. I'm not really
sure where the problem is coming from, it doesn't happen every time I
run the tool. Can anyone point me in the right direction?
Thanks
Shaun
Traceback (most recent call last):
File
"/storage/home/galaxy/te
