Re: [galaxy-dev] Defining new file formats in Galaxy (for new tool wrappers)

2011-08-10 Thread Peter Cock
On Fri, Jun 3, 2011 at 10:03 AM, Peter Cock p.j.a.c...@googlemail.com wrote: Thanks for the link - I was aware my initial work on adding a generic XML filetype was missing some steps, but I ran out of time yesterday: https://bitbucket.org/galaxy/galaxy-central/issue/568 Hi all, Could someone

Re: [galaxy-dev] Customizing/reusing the workflows/run.mako template

2011-08-10 Thread Duddy, John
Interesting - this was a workflow with exactly 1 step - the add a column tool. I looked in my database/files/000 directory, and there was no dataset id 53 - would that be an id in the history_dataset_association table? In any case, I would like to be able to start a workflow for the user

[galaxy-dev] regarding updating data libraries

2011-08-10 Thread Sridhar A Malkaram
Hi, I was wondering if there is a method of updating datasets in a data library, which was created using the option, Upload files from filesystem paths and selecting Link to files without copying into Galaxy. An update operation should reflect any changes that occurred in the filesystem path. Is