Hi Nate,
It must be the issue here, I just learnt the head node is running with
redhat 5 while Galaxy and all the dependencies are running on a redhat 6
server so yes the python version is not the same.
I'll see what I can do with my IS department then.
Cheers for the help :)
Micka
On 2
Hi,
I sent this message about two weeks ago, but by now there was no response.
I try again, maybe now someone who's got some advice notices :-)
Regards,
Steffi
Original Message
Subject:GeneTrack-Installation - Version?
Date: Thu, 20 Oct 2011 23:21:25 +0200
From:
Hello,
I am getting a strange error in attempting to use the main Galaxy toolshed.
I am using the latest version:
galaxy@monolith:~/galaxy-dist$ hg pull -u -r 338ead4737ba
pulling from https://bitbucket.org/galaxy/galaxy-dist/
searching for changes
no changes found
Dear Nate,
My PYTHONPATH is already set to this value.
Best,
Oren
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Shantanu Pavgi wrote:
On Nov 2, 2011, at 3:39 PM, Nate Coraor wrote:
Shantanu Pavgi wrote:
Hi,
It seems like modification of 'citation_url' in the universe_wsgi.ini
config file has no effect in the UI (Help -- How to Cite Galaxy). Is it
something hard-coded in the source?
Ilya, Nate,
To add a bit of background to the below, we have several clusters on campus
that use very different accounting systems; some run as a regular cron job to
process job run info, however others use a qsub wrapper to check service units
prior to job submission (a byproduct of being
Hello,
I am a graduate student at GSU. I am looking for installing GALAXY on our local
server http://alla.cs.gsu.edu/~software. as a result I like my server homepage
start with the GALAXY interface, like this one:
http://rna1.engr.uconn.edu:7474/ . after that I wish to integrate some
Hello,
I am a graduate student at GSU. I am looking for installing GALAXY on our local
server http://alla.cs.gsu.edu/~software. as a result I like my server homepage
start with the GALAXY interface, like this one:
http://rna1.engr.uconn.edu:7474/ . after that I wish to integrate some
I'm reposting over here from the user side, since this is a local
instance, and it was recommended.
Hi all,
We are running Galaxy on an Ubuntu 11.10 computer (5 TB, stripped,
etc.). We are assembling a small genome (110 Gb). Our dataset isn't
directly uploaded, but is accessed from a directory
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Hello Carlos,
If what you want is
I'm not following you - it's been 6 months since I wrote that code ;-}
IT looks to me like a DatasetPath() object is always placed in that array, and
with one exception near then, it looks like the change I made generates those
objects the same way.
Do you have a stack trace for the merge
Nate Coraor (n...@bx.psu.edu) wrote:
Duddy, John wrote:
I'm not following you - it's been 6 months since I wrote that code ;-}
I know the feeling!
IT looks to me like a DatasetPath() object is always placed in that array,
and with one exception near then, it looks like the change I
On Nov 3, 2011, at 9:50 AM, Nate Coraor wrote:
Hi Chris,
Ilya's solution uses sudo to submit the job via drmaa after switching to
the actual user's uid and gid. This means giving your Galaxy user sudo
rights to run 3 scripts as root:
* A script to submit jobs
* A script to kill
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