Hi Galaxy Users,
I'm interested in integrating microarray and NGS data.
My problem concerns the uploading of an affybatch object
in Galaxy (I have a local instance of galaxy, but exacly
the same problem is present in http://main.g2.bx.psu.edu)
After processing the upload, the only message in
Hi Ivan,
In particular the data which I'm trying to upload are
created with rexpression (incidentally, is it still
supported or novel versions are attended?), because
Unfortunately, rexpression is not supported at present- the source is
readily available from bitbucket but the original author
On Nov 8, 2011, at 10:42 PM, Greg Von Kuster wrote:
James,
In addition to Ross's comments, consider that the base class of all Galaxy
datasets ( library datasets, etc ) is the DatasetInstance class, whose
get_file_name() method leverages the file_name property from the Dataset
class (
Hi Dan,
Thanks for your response, but I'm still confused.
When I edit the workflow there are two different kind of Reference
genome fields. One where I can use a drop down menu to select a
reference genome, like in Unified Genotyper tool, where you are
correct the only option is hg_g1k_v37 in
Thanks a lot for your time!, I get it now and I should be able to run
my workflow.
On Wed, Nov 9, 2011 at 11:13 AM, Daniel Blankenberg d...@bx.psu.edu wrote:
Hi Carlos,
In the cases where the Editor is showing a text box instead of the dropdown,
you enter the unique id from the .loc file, in
On Oct 5, 2011, at 10:01 AM, Nikolai Vazov wrote:
Hi,
I can't find out how to use the dropdown User type which is displayed after
I select User Register in the start page of Galaxy. Do I have to define the
types myself? Are they pre-set? The dropdown menu just says Select one, but
the
I have an application that needs to return a zip file.
I attempted to follow the instructions to add a zip datatype, with no
success.
It appears to me that Galaxy insists on generating the output file name
and I can't get it to generate one with a .zip extension.
The documentation on the wiki
I have a diff for a bug that's been present in at least the last two releases
of galaxy-dist when python 2.6(.5) is used, which doesn't have SMTPError in
smtplib:
--- a/lib/galaxy/util/__init__.py
+++ b/lib/galaxy/util/__init__.py
@@ -607,7 +607,7 @@ def send_mail( frm, to, subject, body,
Hi Jim,
Thanks for sending your archive.
I can successfully clone your defuse repository, but I have not tried pushing
anything to it - I don't want to write to your repository. I noticed that your
last change set removed the defuse directory. Did you do that by uploading a
new tarball that
Thank you for the offer Nate. I ended up writing a tool to do the
exporting instead. Less elegant, but it does the job. It solves my
probelm to use Galaxy as a CLI workflow driver.
Best regards
Martin Dahlö
---
Bioinformatic support
martin.da...@scilifelab.uu.se
+46 18 611 59 59
+46 706 70 79 55
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