Thanks Ross, the -v option is definitely a good way to go that I had
not considered. For anyone else following this thread, the tool
dependency environment system was just commented on and documented by
Nate.
See the following links:
On 01/24/2012 10:27 PM, Kim, Hyunsoo wrote:
Hello,
I have local instance of galaxy and wanted to modify “upload file” so
that I will be able to upload large files ( 2GB).
The reason I am trying to do this in browser is that extra tools for FTP
do not really work in my environment because of
Leandro,
Thanks for reporting this, I'm able to reproduce it and will let you know when
I have a fix.
-Dannon
On Jan 20, 2012, at 11:07 AM, Leandro Hermida wrote:
Hi,
There seems to be a weird bug with the Input dataset workflow
control feature, hard to explain clearly but I'll try my
i have installed local instance of galaxy and have a small problem with
samtools. when i try to convert sam file to bam, the result pane shows that the
job is running (for several hours). but when check the galaxy log file, it
shows that the job is finished normally. i can also find the result
Hello,
In the latest galaxy-dist version when running the system cleanup commands
in the documented order I get an error when running the purge_datasets.sh
script:
sh delete_userless_histories.sh
sh purge_histories.sh
sh purge_libraries.sh
sh purge_folders.sh
sh delete_datasets.sh
sh
Hi Dannon,
Thanks I'm glad you could reproduce it! One thing I was thinking about
since you are working in that code area is whether you could make it that
the Input Dataset workflow control feature is not required. When you use
this feature it cannot filter out the dataset history for a
Input Dataset datatype filtering actually used to work, this is a regression
that happened in changeset 6329:ab90893a7cf5. I should have a fix for it today
and you'll be back in business.
-Dannon
On Jan 25, 2012, at 10:53 AM, Leandro Hermida wrote:
Hi Dannon,
Thanks I'm glad you could
Hello,
I have the version 6528:63bc46cc73b7 of galaxy running locally on our server
installed from https://bitbucket.org/galaxy/galaxy-dist/.
I've tried to bring tabular2html tool from Galaxy main tool shed repository
following the wiki information
Hi again,
I'm kind of lost here. Does Data Library allow regular users to upload files
directly to Galaxy from their remote work station, or does it allow users to
use files that are already exist in Galaxy?
My intention was to using HTML5 file uploader which chunks large file( 2GB)
into
Hello,
I am trying to upload BAM files (by pasting a URL) to my history(or
DataLibrary) and get the following error. These are bam files which I had
previously uploaded with no problems.
Traceback (most recent call last):
File /doolittle/Galaxy/galaxy_dist/lib/galaxy/jobs/runners/local.py,
Hi,
I have installed the galaxy on production server. I have uploaded the files
I require through ftp and now when I try to add it to the history, it gives
me error This link may not be followed from within Galaxy. However, I
checked when the same galaxy distribution installed locally, it works
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