Hi all,
Is there any help available which describes about the usage of
dynamic_options?
Is the file should be a python executable or can we use perl?
Thanks and regards,
Deepthi
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Hello all,
I am working on integrating a few tools into Galaxy with multiple outputs.
There are examples on the wiki for handling variable outputs determined by
parameters and an arbitrary number of outputs, but none of them seemed to apply
to this case. This tool must accept two lists of param
Hi there,
I'm having an issue that I believe is commonplace amongst Galaxy users:
that of the webserver failing to update deleted data promptly. I've tried
using the Python script to force an update that was suggested somewhere on
the Wiki, I believe, but to no avail. In terms of making sure ever
Dear all,
I installed and uninstalled some shed tools for my Galaxy instance. And I
have found some weird things which I don't think they are as expected.
1. After I installed a shed tool using the Galaxy web UI and the tool can
run successfully, I didn't find any change of the "shed_tool_conf.x
On Fri, Apr 20, 2012 at 4:12 PM, Brad Chapman wrote:
>
> Peter and Lance;
>
>> I've made the update to Brad's script from the Tool Shed (attached),
>> switching to using genomeCoverageBed and bedGraphToBigWig
>> (based on the approach used in Lance's script), although in doing so
>> I dropped the
Peter and Lance;
> I've made the update to Brad's script from the Tool Shed (attached),
> switching to using genomeCoverageBed and bedGraphToBigWig
> (based on the approach used in Lance's script), although in doing so
> I dropped the region support (which wasn't exposed to the Galaxy
> interface
I'm happy to have a merged version and put us all down as contributing
authors. I won't have a chance to look at the code until next week, but
I'd be happy to help out with any merging, etc.
Thanks to both of you for you help an input.
Lance
Peter Cock wrote:
On Fri, Apr 20, 2012 at 2:17 AM,
On Fri, Apr 20, 2012 at 2:17 AM, Brad Chapman wrote:
>
> Lance and Peter;
> Peter, thanks for noticing the problem and duplicate tools. Lance, I'm
> happy to merge these so there are not two different versions out there.
>
> I prefer your use for genomeCoverageBed over my custom hacks. That's a
>
Mmm... for some reason LD_LIBRARY_PATH was ignored but it looks like
it's working fine when I set the lib path in a .conf file in
/etc/ld.so.conf.d/
Hopefully it'll not break again :)
Best,
L-A
Le 19/04/2012 17:19, Louise-Amélie Schmitt a écrit :
Hi everyone,
I'm currently trying to set up
Hi all,
I would just like to ask if the tmp files in the galaxy-dist/database/tmp
could be removed manually. Also, I ran into this error when I was purging
my deleted datasets:
Error attempting to purge data file:
/home/applications/galaxy-dist/database/files/000/dataset_89.dat error:
unsuppor
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