Hi Dev-Team,
are you planning or maybe working on an update which enables the
possiblilty to run workflows in batch mode with paired end data?
Cheers,
Sascha
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-- Forwarded message --
From: Chebbi Mohamed Amine
Date: 2012/7/18
Subject: Re: [galaxy-dev] Galaxy crach while visualization
To: Jeremy Goecks
Hello Jeremy!
Thanks for your response. Yes the paster.log is not complaining. Excuse me
where I can found the javascript log. In /var/
Hi,
In case you'd be interested: we use a script that creates interlaced
data of paired end data. We run this outside galaxy on groups of
samples ordered in directories at once. We then import the interlaced
data into galaxy, enabling batch workflow. The first step of the
workflow is a deint
On Jul 16, 2012, at 6:42 PM, Smithies, Russell wrote:
> I have a situation I’m sure others have faced but I can’t see how to solve it
> without hacking the src and I’d rather not do that just yet as it complicates
> upgrades.
>
> We’re using Apache with NTLM and “require valid user” so it’s a
IANAAG, but the following should be secure and effective as well (at least
it works for me), setting REMOTE_USER with an Apache authentication module
in conjunction with ProxyPass
RequestHeader set REMOTE_USER %{REMOTE_USER}s
RequestHeader edit REMOTE_USER ^.*(.+?) $1
Cheers,
Paul
On 12-0
On Jul 15, 2012, at 4:09 PM, Di Pe wrote:
> Hi,
>
> there seems to be an issue with pulling this egg at least since yesterday.
>
> Some eggs are out of date, attempting to fetch...
> Fetched
> http://eggs.g2.bx.psu.edu/pysam/pysam-0.4.2_kanwei_b10f6e722e9a-py2.7-linux-x86_64-ucs4.egg
> Fetched
On Jul 18, 2012, at 2:55 PM, christopher fletez-brant wrote:
> Hi, just wondering if anyone has any insight into this issue, as it is
> driving me crazy, especially given that the correct list control element is
> selected (hg19).
>From the output you sent, it doesn't look like your tool is act
Hi,I am running into some out-of-disk space errors with some of my jobs and this was because the /tmp space is running out of space.I want to use a different temporary directory but I can't get GALAXY to pick up my settings...I use this in the .ini file# Temporary files are stored in this directory
On Jul 18, 2012, at 4:17 PM, Anthonius deBoer wrote:
> Hi,
>
> I am running into some out-of-disk space errors with some of my jobs and this
> was because the /tmp space is running out of space.
>
> I want to use a different temporary directory but I can't get GALAXY to pick
> up my settings..
Hi, just wondering if anyone has any insight into this issue, as it is
driving me crazy, especially given that the correct list control element is
selected (hg19).
On Sat, Jul 14, 2012 at 8:54 PM, christopher fletez-brant <
cafletezbr...@gmail.com> wrote:
> Hi Nate,
>
> Thanks for the reply. Err
Hi Nate,
The test XML is:
And the XML for the problematic parameter, indices_path, is:
Thanks for the reply!
On Wed, Jul 18, 2012 at 3:55 PM, Nate Coraor wro
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