On Tue, Sep 4, 2012 at 4:57 PM, Peter Cock wrote:
> On Tue, Sep 4, 2012 at 4:54 PM, Dan Tenenbaum wrote:
>> So, sounds like maybe this feature does not existI'd like to
>> request it (given a dataset, I'd like to be able to show the column
>> headers of that dataset in a select box).
>> Thank
On Tue, Sep 4, 2012 at 4:54 PM, Dan Tenenbaum wrote:
> So, sounds like maybe this feature does not existI'd like to
> request it (given a dataset, I'd like to be able to show the column
> headers of that dataset in a select box).
> Thanks,
> Dan
No, it doesn't, but I'd like it too:
https://bi
Hi Lance,
Thanks for reporting these issues - the tool dependencies component is fairly
new, so you may have uncovered some problems that need correction. I'll take a
look at these. make corrections if necessary, and get back to you when all is
functional.
Thanks!
Greg Von Kuster
On Sep 4,
Dear list members,
Did anyone migrate the Galaxy database from MySQL to Postgres lately?
Any verified script available? Simple solution by adding a postgres
flag in mysqldump
(http://dev.list.galaxyproject.org/MySQL-2-Postgres-td4139570.html)
didn't work for me. It throws lots of syntax errors on
I've put together a tool wrapper for the htseq-count script that is part
of the HTSeq python package and uploaded that to the tool shed.
However, I have discovered that the tool dependancies do not install
properly. There are a couple of issues that I've run into.
1) The biggest issue is the
I would like to be able to post questions to the galaxy-dev and/or galaxy-user
lists. I am using Galaxy with Amazon Cloud EC2.
Could I have my name added to the list?
Gloria
I tried registering myself under my university's email: gkreitin...@wisc.edu
_
On Jul 28, 2012, at 8:09 PM, Peter Schmitt wrote:
> New galaxy install. Running the tutorial Galaxy 101 and trying to do the
> join. Get the following error in the stderr of the job:
> Traceback (most recent call last):
> File "/opt/galaxy/galaxy-dist/tools/new_operations/gops_join.py", line
So, sounds like maybe this feature does not existI'd like to
request it (given a dataset, I'd like to be able to show the column
headers of that dataset in a select box).
Thanks,
Dan
On Wed, Aug 29, 2012 at 11:09 AM, Dan Tenenbaum wrote:
> Hi,
> I have some code that makes a plot and creates
Hi,
Kind of feature request: parameter of type 'password' so that an entered
password is not shown in the html form nor in the logs.
Or is there already a way to achieve this that I missed out ?
Cheers,
Marc
THIS E-MAIL MESSAGE IS INTENDED ONLY FOR THE USE
Hi, Galaxy Developers,
I apologize for resurrecting another old thread
(http://dev.list.galaxyproject.org/delete-data-library-via-API-td4553000.html),
and for this long-winded email...
First things first, I am trying to confirm what is suggested in the thread
cited above (that data sets cannot
Hi Paul,
In case you are not aware of it, the Galaxy tool shed wiki explains the tool
shed: http://wiki.g2.bx.psu.edu/Tool%20Shed
On Sep 4, 2012, at 6:25 AM, Paul-Michael Agapow wrote:
> I've "inherited" a galaxy setup from someone (details: a contractor set it up
> but left it unfinished so
Hi Hans!
I try to clarify my problem:
The user selects a reference genome from .
So in my scenario the value for $sReference.reference will be either "mm9_64"
or "hg19". This value is needed
to filter the supported reference annotations in case the user wants
cuffcompare to be run. That?s why
Hi Sascha
I don't quite understand your question...
$sReference.ref is the variable you are looking for, isn't-it?
Regards, Hans
On 09/04/2012 11:40 AM, Sascha Kastens wrote:
Hi all!
I am facing a simple problem but can’t find a solution to solve it.
Before I start describing my problem he
Ahh.. Just realized that the installation to local galaxy is done from the
web runner interface...under "search and browse toolsheds"...forgotten
about that one! :)
On Tue, Sep 4, 2012 at 2:13 PM, Ivan Lovric wrote:
> Hi there,
>
> I've been having some trouble with the Tool Shed recently. This
I've "inherited" a galaxy setup from someone (details: a contractor set it
up but left it unfinished so I'm completing the job while discovering and
documenting what was done). The catch: it's setup as a twin galaxy instance
with one as a front-end web-server and the other as the job runner.
Admit
Hi all!
I am facing a simple problem but can?t find a solution to solve it.
Before I start describing my problem here is the code from my tool:
mm9_64
hg19
custom (from history, fasta)
Hi,
I am new to Galaxy and have not found a solution on dev-list to this 8-bit
bytestrings error.
That occurs on my local installation but not on Galaxy main server.
Cheers
Dataset generation errors
*Dataset 22: Neighbor Joining Tree on data 20*
The Galaxy framework encountered the follo
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