[galaxy-dev] Failed to run display.py

2012-10-21 Thread Tom Hait
Hello, I'm new with Galaxy api. I'm following the ReadMe file in script/api. I'm trying to run: python display.py ff76834f42d18414b4aaed577466ef35 http://0.0.0.0:8080/api/libraries and it doesn't work, it says: HTTP Error 503: Service Unavailable !DOCTYPE HTML PUBLIC -//W3C//DTD HTML 4.01

Re: [galaxy-dev] Failed to run display.py

2012-10-21 Thread Dannon Baker
On Oct 21, 2012, at 6:11 AM, Tom Hait sth...@gmail.com wrote: so I tried to change the URL to: http://localhost:8080, http://127.0.0.1:8080 ... It also didn't work. Any Ideas about could go wrong? First thing I'd check would be to verify that your galaxy server is currently running, and

Re: [galaxy-dev] Failed to run display.py

2012-10-21 Thread Tom Hait
Hi Dannon, Thanks for the reply. Galaxy is running - I just typed http://localhost:8080 on the browser and I get the galaxy with the line: *Hello world! It's running...* * * *Tom. * On Sun, Oct 21, 2012 at 3:55 PM, Dannon Baker dannonba...@me.com wrote: On Oct 21, 2012, at 6:11 AM, Tom Hait

Re: [galaxy-dev] Poisson two-sample test question

2012-10-21 Thread Josh Herr
Hi Anton and the Galaxy Developers, Please forgive me for contacting the list, but for the life of me I've tried over the last couple of weeks to get the Poisson two-sample test under the metagenomic analysis option to work. My table is simple: a three column tabular file with the first column

Re: [galaxy-dev] Error running cuffmerge

2012-10-21 Thread Jennifer Jackson
Hello Iry, It seems that you need to update Cufflinks and include the helper script gtf_to_sam that comes with it. The current version supported by the wrappers available in galaxy-central and the latest galaxy-dist use version 1.3.0. Details, including links to download locations, can be

[galaxy-dev] Output from Barcode splitter

2012-10-21 Thread Philipe Moncuquet
Hi, I am trying to use the Barcode splitter tool as part of a workflow, I am not happy with the html output produce by this tool and would like to have access to fasta files. Any suggestions on how I can modify the tool so that it produces fasta outputs that would appear in the workflow ? Thanks