Dear list,
In my galaxy fork, I extensively use the job splitters. Sometimes
though, I have to split to different file types for the same job. That
raises an exception in the lib/galaxy/jobs/splitters/multi.py module.
I have turned this behaviour off for my own work, but am now wondering
On Thu, Oct 25, 2012 at 9:36 AM, Jorrit Boekel
jorrit.boe...@scilifelab.se wrote:
Dear list,
In my galaxy fork, I extensively use the job splitters. Sometimes though, I
have to split to different file types for the same job. That raises an
exception in the lib/galaxy/jobs/splitters/multi.py
On 10/25/2012 11:25 AM, Peter Cock wrote:
On Thu, Oct 25, 2012 at 10:00 AM, Jorrit Boekel
jorrit.boe...@scilifelab.se wrote:
On 10/25/2012 10:54 AM, Peter Cock wrote:
On Thu, Oct 25, 2012 at 9:36 AM, Jorrit Boekel
jorrit.boe...@scilifelab.se wrote:
Dear list,
In my galaxy fork, I extensively
On Thu, Oct 25, 2012 at 10:35 AM, Jorrit Boekel
jorrit.boe...@scilifelab.se wrote:
On 10/25/2012 11:25 AM, Peter Cock wrote:
I don't quite follow your example, but I can see some (simpler?) cases
for sequencing data - paired splitting of a FASTA + QUAL file, or
paired splitting of two FASTQ
On 10/25/2012 12:02 PM, Peter Cock wrote:
On Thu, Oct 25, 2012 at 10:35 AM, Jorrit Boekel
jorrit.boe...@scilifelab.se wrote:
My question is still though if it would be bad to not raise an exception
when different filetypes are split in the same job.
In general splitting multiple files of
Hi,
on our local Galaxy instance I try to setup Visualization.
I followed
http://wiki.g2.bx.psu.edu/Learn/Visualization#Setup_for_Local_Instances
But when I try to create a new visalization I get an error with this traceback:
URL: http://bbc.mdc-berlin.de/galaxy/visualization/create
File
My fault. I did not set a title for it.
(Anyway this should be caught I think.)
regards, Andreas
On 25.10.2012 13:18, Andreas Kuntzagk wrote:
Hi,
on our local Galaxy instance I try to setup Visualization.
I followed
http://wiki.g2.bx.psu.edu/Learn/Visualization#Setup_for_Local_Instances
But
Hi Bjorn,
I've committed an slightly altered version of your contributed code for
handling tool dependencies that are zip archives in change set
8107:b12140970208, which will be available in the next Galaxy release currently
scheduled for the end of next week. Your code required Python 2.6+,
Re-post to galaxy-...@bx.psu.edu
Todd - this will give your questions better visibility. This is your own
tool? And other tools packaged with the standard Galaxy distribution or
installed from the Tool Shed run OK on the cluster?
If your own tool (and others work, ruling out cluster set-up
Hi guys,
Just found that history export file created on our galaxy always corrupted.
We spotted that enabling the Apache Compression (on Galaxy wiki) is the
cause.
SetOutputFilter DEFLATESetEnvIfNoCase Request_URI \.(?:gif|jpe?g|png)$
no-gzip dont-varySetEnvIfNoCase Request_URI
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