On Nov 2, 2012, at 3:58 PM, Carlos Borroto wrote:
>
> Please, could you share your rules related to blast. I would love to
> take a look at them.
>
> Thanks,
> Carlos
Here is the blastn rule procedure code and the relevant snippet of the default
runner procedure. I just added the database ba
On Nov 2, 2012, at 4:42 PM, Carlos Borroto wrote:
> On Fri, Nov 2, 2012 at 3:58 PM, Carlos Borroto
> wrote:
>> On Fri, Nov 2, 2012 at 9:53 AM, Oleksandr Moskalenko
>> wrote:
>>>
>>> The dynamic runner is alive and well thanks to the continuous work of the
>>> author John Chilton and others
On Fri, Nov 2, 2012 at 3:58 PM, Carlos Borroto wrote:
> On Fri, Nov 2, 2012 at 9:53 AM, Oleksandr Moskalenko wrote:
>>
>> The dynamic runner is alive and well thanks to the continuous work of the
>> author John Chilton and others. For instance, yesterday John committed code
>> to galaxy-central
Hi Alex,
On Fri, Nov 2, 2012 at 9:53 AM, Oleksandr Moskalenko wrote:
>
> The dynamic runner is alive and well thanks to the continuous work of the
> author John Chilton and others. For instance, yesterday John committed code
> to galaxy-central that propagates tracebacks from the dynamic job ru
On Nov 1, 2012, at 4:22 PM, Carlos Borroto wrote:
> Hi,
>
> I've been researching the possibility of using dynamic job runner in
> combination with job splitting for blast jobs. My main interest is to
> create a rule where both the size of the query and the database are
> taken into considerati
On 11/02/2012 02:20 PM, Vladimir Yamshchikov wrote:
Someone has advised also that SQLite, which is the default option,
> is not adequate for serious work. Is this something I need to
> change too?
Indeed, see:
http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server
> I mean c
Oh,
I forgot to mention it:
hg18.fa.fai is already in tool-data/shared/ucsc/hg18/sam_index/ as a link to
tool-data/shared/ucsc/hg18/seq
Replacing the link with the actual file did not help (not suprising).
regards, Andreas
On 01.11.2012 17:56, Dave Bouvier wrote:
Andreas,
I recommend movi