Re: [galaxy-dev] Anonymous use of workflows and visualization?

I'd also been been worried about a similar requirement to ensure reviewers could have anonymous access to software run as a service. In that case even providing dummy accounts to the reviewers might not have been allowed (since the administrator could easily 'spy' on what the reviewers did or

Re: [galaxy-dev] FTP and data library uploads

On Jan 14, 2013, at 11:45 PM, Shantanu Pavgi (Campus) wrote: On Jan 9, 2013, at 12:41 PM, Nate Coraor wrote: Hi Shantanu, The code in question is actually in the upload tool, tools/data_source/upload.py. In general, you should be able to minimize the number of copy and delete steps

Re: [galaxy-dev] Enhancing tool id=subtract_query1

Even for a small change a pull request is preferred since they allow the origin of the change to be tracked. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other

Re: [galaxy-dev] Can't see history settings, reload etc. after recent update

Do you see the same problem if you access main.g2.bx.psu.edu? What browser are you using? You may need to clear your browser cache. -- James Taylor, Assistant Professor, Biology/CS, Emory University On Mon, Jan 14, 2013 at 11:03 PM, Anthonius deBoer thondeb...@me.comwrote: Hi, I just

[galaxy-dev] Synchronize Data Library with Directory

I installed a local Galaxy server with Apache proxy, kerberos authentication and submitting to a cluster with DRMAA. Everything works great, so far. Sequence data is NFS mounted on the Galaxy server and all cluster nodes at /shared/ngs/labname. I would like to configure one Data Library for

[galaxy-dev] Galaxy with Univa Grid Engine (UGE) instead of SGE?

Hello all, Our local Galaxy server had been running happily under SGE, using one of the last free releases (not sure exactly which - I could ask). Due to concerns about long term maintenance, the SysAdmin has moved us to an SGE compatible setup - Univa Grid Engine (UGE). However, in at least one

[galaxy-dev] local galaxy tool shed install

Having followed the directions in HostingALocalToolShed I ran run_community.sh with the default configurations in community_wsgi.ini. It executed without error but failed to start the tool shed as http://127.0.0.1:9009 returns Unable to Connect error Thanks for your help Mark This

Re: [galaxy-dev] local galaxy tool shed install

Hi Mark, What version of Galaxy are you running, and what does your tool shed paster log show? Greg Von Kuster On Jan 15, 2013, at 5:49 PM, mark.r...@syngenta.com wrote: Having followed the directions in “HostingALocalToolShed” I ran run_community.sh with the default configurations in

[galaxy-dev] Workflows

Hi Sorry if these questions are obvious but I just don't know how to find the answers. I'm trying to get one of the API examples to work in http://wiki.galaxyproject.org/Learn/API/Examples . I've got my API key but how do I get/find the workflow id (f2db41e1fa331b3e in the examples). I've

[galaxy-dev] envirtual and import numpy problem

Hi, First it started with the error message: self.check_version_conflict(). So I use the virtualenv as instructed in wiki. But I got a new error: ImportError: No module named rpy/numpy... I will not have this importerror if I dont use the virtualenv. How to solve this problem? Thanks, Huayan