Re: [galaxy-dev] Visualise Galaxy workflows using graphviz

2013-01-20 Thread Björn Grüning
Hi, please find attached a small patch that add the gen_image() functionality to the export-workflow UI. I was not able to figure out how to add a patch to the trello card. But at least i created one ;). https://trello.com/c/PGz7JNzO Ciao, Bjoern Thanks for sharing Peter. FWIW, there is

Re: [galaxy-dev] Job handler keeps crashing

2013-01-20 Thread Derrick Lin
I had a close look at the code in galaxy-dist / lib / galaxy / jobs / handler.py galaxy-dist / lib / galaxy / jobs / runners / drmaa.py and found that stopping deleted and deleted_new seems to be normal routine for the job handler. Could not find any exception that caused the shutdown. I do

Re: [galaxy-dev] Job handler keeps crashing

2013-01-20 Thread Derrick Lin
Update to the 11 Jan 2013 dist does not help with this issue. :( I checked the database and have the look at the job entries that handler0 tried to stop then shutdown: | 3088 | 2013-01-03 14:25:38 | 2013-01-03 14:27:05 |531 |

Re: [galaxy-dev] deleted_new kills handlers

2013-01-20 Thread Derrick Lin
Hi Ido, I just found you post, and I think we are having the similar issue as your. (I posted it in the mailing yesterday, you can find it for the detail of my problem). I am wondering if you are able to fix your problem? Cheers, Derrick On Tue, Dec 11, 2012 at 12:13 AM, Ido Tamir