Hi Carlos,
Thank you very much for your help.I use Galaxy with the torque2.5.0,pbs_python
for a test.It seems to work successfully !
shenwiyn
From: Carlos Borroto
Date: 2013-07-10 01:49
To: shenwiyn
CC: galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] Build the Galaxy under Cluster
Hi
Hi Thon Deboer ,
I am a newer in Galaxy.I installed my Galaxy with Torque2.5.0 ,and Galaxy uses
the pbs_modoule to interface with TORQUE.But I have some question of the
job_conf.xml :
1.)In your job_conf.xml ,you use regularjobs,longjobs,shortjobs...to run
different jobs ,how our Galaxy know
On Jul 31, 2013, at 8:52 AM, shenwiyn shenw...@gmail.com wrote:
Hi Thon Deboer ,
I am a newer in Galaxy.I installed my Galaxy with Torque2.5.0 ,and Galaxy
uses the pbs_modoule to interface with TORQUE.But I have some question of the
job_conf.xml :
1.)In your job_conf.xml ,you use
Hi everyone,
In my local Galaxy,when I want to reset my Login password,some error occurre
:Mail is not configured for this Galaxy instance. Please contact an
administrator. Could anyone tell me some imformation about how to configure
the mail for my Galaxy instance?
Thank you very much.
Hi Shenwiyn
You need to specify a SMTP server. Have a look at the 'smtp_server'
settings in your universe_wsgi.ini file.
Regards, Hans-Rudolf
On 07/31/2013 04:19 PM, shenwiyn wrote:
Hi everyone,
In my local Galaxy,when I want to reset my Login password,some error
occurre
:Mail is not
Dear all,
When trying to run velvet optimizer in galaxy, all the files we get return the
following:
No peek
When looking at the output of galaxy, we get the following:
galaxy.jobs.runners.local DEBUG 2013-07-31 09:31:46,829 execution finished:
perl
I installed a local instance of GALAXY following the instructions at Get
Galaxy ... in the Wiki. It installed ok, but when I tried the Bowtie2 mapper
with a test data set, I noticed that the reference genomes are missing. How can
I get the reference genomes (e.g. latest version of mouse and
Hello all,
The August 2013 Galaxy Update is now
availablehttp://wiki.galaxyproject.org/GalaxyUpdates/2013_08
.
*Highlights:*
-
*GCC2013
Reporthttp://wiki.galaxyproject.org/GalaxyUpdates/2013_08#GCC2013_Report
:* Meeting summaries, and links to videos, talks, posters, and Training
I'm setting up Galaxy and Torque with my cluster and I was wondering if I
could set it up so that nodes could be assigned for a whole history. This
way I can re-run histories on certain nodes for benchmarking runtimes.
It seems that the closest I can get with the built in functionality is
Dear all,
When trying to share a dataset in galaxy among users, usually this
sharing fails. Usually when we go to Dataset Securities and try to
change the permissions of the datasets the sharing fails. Instead, it
keeps the original configuration and then it will open another galaxy
page inside
On 07/31/2013 11:24 AM, Perez, Ricardo wrote:
Dear all,
When trying to run velvet optimizer in galaxy, all the files we get return the
following:
No peek
When looking at the output of galaxy, we get the following:
galaxy.jobs.runners.local DEBUG 2013-07-31 09:31:46,829 execution finished:
Hi,
I wish to import data into my local instance of galaxy from another
website. Kindly let me know how to achieve that and what all is
required. I want to import data from a chemoinformatic database (mainly
compound structures) into galaxy and run my own analysis tools on them.
Regards,
Hi guys,
Since the last update of Galaxy. We are enable to edit pages on our local
instance. Pages can be viewed without problems but not editing. The server
error we get is as foolow, any advice would be greatly appreciated.
URL:
Hi Ido Tamir,
I have the same question too. I set megablast as long_jobs for the
test,when I cancel my megablast job in Galaxy history before it finishs,it
still work in my background.The drmaa_external_killer.py seems doesn't work.I
don't know where is the problem,and hope someone can help me
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