Hi,
A few days ago, I have installed the stable release of of Galaxy local
instance on my Workstation I am running it behind Apache web server proxy
.
In regard to the data snapshots, I've observed that, it is much more
organized on the Galaxy main rather than on my local instance.
For example,
After some investigating I think the problem is at the line:
converted_dataset = converter.execute( trans, incoming=params,
set_output_hid=visible, set_output_history=set_output_history)[1]
in File
/panfs/pstor.storage/home/qbcglab/galaxy_run/galaxy-dist/lib/galaxy/datatypes/data.py,
line
On Thu, Aug 1, 2013 at 8:43 PM, Dave Bouvier d...@bx.psu.edu wrote:
Peter,
As of 10290:d34d6d1da813, nsltradamus and effectivet3 should start returning
valid test results.
Great - so this was a sniffer bug for the twobit format going wrong,
I am working on putting a tool into the toolshed. I have a bash script wrapper.
I uploaded the first version fine, but when I wanted to upload a revision, some
unwanted characters are inserted around the revised function of my code (see
bottom) ..the inserted local etc strings are causing my
Hi Nikhil
what is the data format for this data set in your local installation and
on main?
Regards, Hans-Rudolf
On 08/02/2013 09:56 AM, Nikhil Mallela wrote:
Hi,
A few days ago, I have installed the stable release of of Galaxy local
instanceon my Workstation I am running it behind
Hi Saskia,
you need to fix that wrapper. Its a merge conflict you need to resolve
by your own (indicated by ==).
Cheers,
Bjoern
I am working on putting a tool into the toolshed. I have a bash script
wrapper. I uploaded the first version fine, but when I wanted to
upload a revision, some
and now, what happens, if you change it to 'tabular'?
(click on the pencil icon - 'Edit Attributes', and then on Datatype
On 08/02/2013 12:18 PM, Nikhil Mallela wrote:
Hi Hans-Rudolf,
I was wrong previously. It is output produced (.txt) while computing the
quality statistics on the .qual
Hi Jorrit,
Thanks a lot for the explanation. Sorry to trouble on you holidays. Enjoy your
time off.
Cheers,
- Piotr
From: Jorrit Boekel [mailto:jorrit.boe...@scilifelab.se]
Sent: Thursday, August 01, 2013 7:45 PM
To: Szul, Piotr (ICT Centre, Marsfield)
Cc: Khassapov, Alex (CSIRO IMT,
HI Shenwiyn,
The definition of regularjobs etc. is there to allow each job to be run
under different environment on the cluster.
I am actually not using most of those definitions, except for the BWA tool,
which I want to run using 4 slots on our cluster so I use the destination
I did some more investigation of this issue
I do notice that my 4 core, 8 slot VM machine has a load of 32, with only my
4 handler processes running (Plus my web server), but not even getting more
than 10% of the CPU each.
There seems to be some process in my handlers that takes an incredible
Peter,
This should be fixed in 10296:22fb05ea1b47, and clinod should no longer
be in that list after the automated testing framework checks it again.
--Dave B.
On 8/2/13 09:56:25.000, Peter Cock wrote:
Hi again,
Currently under Latest revision: installation errors' my clinod
tool is
Hi, I wanted to reload xml tool wrapper pages without using the browser.
Going off of this page...
http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-March/009126.html
I wrote a little python script that takes the tool name (the thing at the
top of the xml wrapper file) as a parameter and reloads
12 matches
Mail list logo
