Hi,
That sort of sharing only works within a single galaxy instance; users are
not shared between different galaxies. To copy an entire history from one
instance to another you will want to use the history export/import
functionality. History context menu -> Export to file on the source
instance
Hi there,
I am trying to install Galaxy locally on my Mac OSX 10.9, python 2.7.
Nonetheless, when I run it, it says that some eggs are out of date. I have
fetched them, but the following message appears:
Mac-Pro-Cesar-Rodriguez:scripts Rodriguez$ python fetch_eggs.py
Warning: MarkupSafe (a depe
Hi Nate,
Thanks so much for the help.
Aslo, I solved my second issue. Here are the the changes I made to the Apache
conf file.
RewriteCond %{HTTPS} off
#RewriteRule ^(.*) http://localhost:8080$1 [P]
RewriteRule ^/?(.*) https://%{SERVER_NAME}/$1 [R,L]
Now http will be redirected to https. Just pu
Hi Geert,
thanks for the information. Are you running GATK-2.4 or GATK-Lite-2.4.
As far I know the lite version is deprecated.
JJ are your wrappers in bitbucket/github? If you agree I would try to
migrate to a recent GATK version and implement GALAXY_SLOTS. Not sure
about the installation recipe
Hi Nate,
Thanks for the note!
So may I ask whether this is expected? I mean, the len_file_path points to
tool-data/..., which is right inside galaxy-dist, and it is natural. I
didn't realize
that this path is relative to the individual job working dir. Are there any
other
similar cases?
Best,
Ru
On Tue, Nov 19, 2013 at 12:32 PM, Jingchao Zhang wrote:
> Hi Peter,
>
> Thanks so much for your help! It is like you said a browser issue.
>
> I also noticed that the Galaxy main server (https://usegalaxy.org/)
> doesn't have this problem. And their USCS main table browser uses "https"
> instead
Hello all,
Just a reminder that there is a GalaxyAdmins meetup on Wednesday November
20 (tomorrow) at 10am US Central time. See
http://wiki.galaxyproject.org/Community/GalaxyAdmins/Meetups/2013_11_20
Nate Coraor will talk about the move of usegalaxy.org to TACC, and Srinivas
and myself will talk
Hi Peter,
Thanks so much for your help! It is like you said a browser issue.
I also noticed that the Galaxy main server (https://usegalaxy.org/) doesn't
have this problem. And their USCS main table browser uses "https" instead of
"http". Does anyone know why this isn't included in the current
Hi,
I have GATK 2.4 running in our local galaxy, next to the default galaxy
1.x version. Both are in the tool menu, but only users that have
provided a licence or proof that they are from an academic site have
access to the 2.4 version. This is based on a usergroup check in a
dynamic job runn
Hi,
I found that the GATK tools do not have the same requirement tag. For
example indel-realigner has version 1.4, realigner_target_creator has
version 1.3. Is that correct? What is the recent version that is
required for GATK?
Also realigner_target_creator uses the "gatk_picard_indexes" location
Hi,
my mistake... I got an error in the apache proxy configuration. The
"funny" thing is that everything seemed to work excepted the tool panel
menu which was empty.
Sorry for that and thanks.
Yec'han
Dr. Yec'han LAIZET
Ingenieur Bioinforma
Hello Jim
Re your problem #1 (UCSC browser appears to be blocked), I've seen
something similar with our local Galaxy instance, which is also served
via https.
In our case I believe this is actually a browser issue: the latest
version of Firefox silently blocks mixed secure and insecure conte
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