Not sure if this question or solution has passed this list already but couldn't
find anything in the archive.
Is it possible to somehow insert separator lines between groups of for instance
bowtie2 indexes?
One of our tool displays it like below (the - lines); I would like to add
separ
Dear Galaxy devs,
I apologize if somebody has already proposed this idea.
I think that it would be great to have a filter for the history panel based
on name, data type and so on similar to the one on the tools panel. I
really feel the need of it when working on histories with many datasets.
Fede
Anyone have any ideas on this?
Thanks,
-Adam
--
Adam Brenner
Computer Science, Undergraduate Student
Donald Bren School of Information and Computer Sciences
System Administrator, HPC Cluster
Office of Information Technology
http://hpc.oit.uci.edu/
University of California, Irvine
www.ics.uci.e
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Looks like a permission issue. Is your FTP server set to use the same
user/group as galaxy?
For reference: my proftpd is configured to use LDAP user information,
but then it forces the user/group id of uploaded files to be that of galaxy
# Fo
dear Galaxians,
my server is behind a proxy with user authentication.
Wget and hg work fine however unfortunately when I try to install from the
tool shed I get error since the system is using urllib2 that is known not
to be compatible with proxy with authentication.
How should one locally install
Hi Luca,
I had a similar issue and I exported proxy url’s in run.sh and toolshed started
working. It might be helpful.
run.sh:
#!/bin/sh
cd `dirname $0`
export http_proxy=http://your_proxy:port
export ftp_proxy=http://your_proxy:port
Best,
Alper Kucukural, PhD
Bioinformatics Core,
Universit
Hi Luca,
On 3 February 2014 18:07, Luca Toldo wrote:
> dear Galaxians,
> my server is behind a proxy with user authentication.
> Wget and hg work fine however unfortunately when I try to install from the
> tool shed I get error since the system is using urllib2 that is known not to
> be compati
Thankyou so much Saket and Alper for your so fast reply !
I confirm, I've modified run.sh as follows:
after the "cd dirname $0" I've added the following 2 lines and then re
started the service ... and then from the Admin panel the installation
works ! That is great and I would strongly suggest to
On Thu, Jan 30, 2014 at 4:32 PM, Greg Von Kuster wrote:
> On Jan 29, 2014, at 1:18 PM, Greg Von Kuster wrote:
>> Peter wrote:
>>> http://toolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr
>>> 2014-01-29 missing blast_datatypes dependency (why?)
>>> 2014-01-28 showing failed tests for samba
