Hi Guys,
Sorry for the duplicate posting...nobody saw my original one seems and I'm
still wondering what the proper way is. I searched around the wiki but
didn't find much.
Originally, I installed macs dependency for galaxy myself. The version is
1.4.2. It worked well.
Now, after galaxy
Eric,
Right - it is obviously not an XML encoding issue based on your
original e-mail. Sorry about that - still wish I understood why others
have not encountered this or when the regression was introduced.
Regardless - I have committed this patch to galaxy-central. Let me
know if there is
Hello,
Are you able to run `qstat -x` on the command line on the remote
system? What's the output?
--nate
On Thu, Mar 6, 2014 at 1:01 PM, ngsf...@hygenomics.com
ngsf...@hygenomics.com wrote:
hi all:
galaxy.jobs.runners.cli_job.torque WARNING 2014-03-07 11:23:33,764 No valid
qstat XML
On Thu, Mar 6, 2014 at 8:04 PM, Jun Fan j@qmul.ac.uk wrote:
Hi John,
Thanks for your reply.
Question 1:
I used the relative path (e.g. ../../../applications/executable) which
still does not work. I have managed to put the script in the same folder
which works though against
Hi all,
I have looked and I found only one
placehttp://www.mail-archive.com/galaxy-dev%40lists.bx.psu.edu/msg04237.html
where this question was asked back in 2012 but no answers. My question is how
can I specify a dataset in a shared library without importing the dataset to my
current
Hi,
I've finally figured out what is happening with galaxy on my end regarding
tools not showing up in the menu. I moved my install to a new larger file
system and started from scratch wiping out the database to rule out my having
messed up the galaxy instance.
The first tool I tried was one
Brilliant, thanks John. I was poking through history while trying to
figure this out and it seems like the conditions to cause this have been
around for quite a while; pure chance that no one has noticed it?
Quite possible that other runners have this as well (haven't checked);
anywhere a 'str'
Hello Sheldon,
On Mar 7, 2014, at 2:14 PM, Briand, Sheldon sheldon.bri...@ssc-spc.gc.ca
wrote:
Hi,
I've finally figured out what is happening with galaxy on my end regarding
tools not showing up in the menu. I moved my install to a new larger file
system and started from scratch
Hi Guys,
I'm sorry to post multiple times for the same question. Now I removed all
the specifics of my problem and I only want someone to point me to the
right documentation. Admins, I know you are busy, but don't you want more
people to benefit from this platform?
When galaxy upgraded it
Hi Rui,
if you want to use only the local installation and not the toolshed one,
go to the toolshed installation inside your galaxy and remove under
manage tool dependencies the dependency on macs2. As soon as you get
rid of the dependency the local installation is used.
Cheers,
Bjoern
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