[galaxy-dev] June 2014 Galaxy Update Newsletter: GCC2014 registration closes in 1 week!

2014-05-30 Thread Dave Clements
Hello all, The June 2014 Galaxy Update Newsletter https://wiki.galaxyproject.org/GalaxyUpdates/2014_06 is out! There's a lot going on in the project and the community right now. The big news for the coming month is - *GCC2014 registration closes June 6!

[galaxy-dev] stdout in history

2014-05-30 Thread Neil.Burdett
Hi, It seems that the first 4/5 lines that are printed in the source code tools appear in the history (when expended) and in stdout link. Is there anyway to stop print statements appearing in the history panel? Thanks Neil ___ Please

Re: [galaxy-dev] stdout in history

2014-05-30 Thread Wolfgang Maier
you could just redirect stdout to /dev/null in the tool's xml command line ? Is that an option for you ? Cheers, Wolfgang On 30.05.2014 14:35, neil.burd...@csiro.au wrote: Hi, It seems that the first 4/5 lines that are printed in the source code tools appear in the history (when

[galaxy-dev] stdout in history

2014-05-30 Thread Neil.Burdett
Yes that would work. Can you supply an example if possible please? Thanks Neil Message: 3 Date: Fri, 30 May 2014 15:04:47 +0200 From: Wolfgang Maier wolfgang.ma...@biologie.uni-freiburg.de To: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] stdout in history Message-ID:

[galaxy-dev] tool dependencies fail

2014-05-30 Thread Isabelle Phan
Hello, I'm following Managed Tool Dependencies to the letter and still can't get Galaxy to find the executable. Is this page https://wiki.galaxyproject.org/Admin/Config/ToolDependencies up to date? If yes, what am I doing wrong? Any help greatly appreciated! # universe_wsgi.ini # I also tried

Re: [galaxy-dev] tool dependencies fail

2014-05-30 Thread Björn Grüning
Hi, can you try: requirements requirement type=packagehhsuite/requirement /requirements Hope that helps, sorry for the short answer I'm too tired :) Bjoern Am 31.05.2014 01:53, schrieb Isabelle Phan: Hello, I'm following Managed Tool Dependencies to the letter and still