[galaxy-dev] Run Jobs as Real User - How to Configure it for TORQUE

2014-07-20 Thread Ping Luo
I have installed pbs_python module on our cluster to interface Galaxy with TORQUE. I am able to submit and run jobs on our cluster as the Galaxy user. I need to run Galaxy jobs as the real user. The instruction in the user guide is for DRMAA interface. How can I configure running jobs as real user

Re: [galaxy-dev] questions about cloudman

2014-07-20 Thread Dannon Baker
Hi Pablo, 1) I have read in the wiki that it's only available in region US East > (Virginia). Will it be available in Ireland region? > This is currently true, though we're hoping to mirror to other regions soon. > 2) I see I need to attach EBS volumes to my head node to host the > software and

Re: [galaxy-dev] writing datatypes

2014-07-20 Thread Peter Cock
On Sun, Jul 20, 2014 at 6:23 PM, Björn Grüning wrote: > Hi, > > single datatype definitions only work if you haven’t defined any converters. > Let's assume I have a datatype X and want to ship a X -> Y converter (Y -> X > is also possible), we will end up with a dependency loop, or? The X > reposi

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-20 Thread Björn Grüning
Hi Ben, sorry but we do not run a Torque setup. Do you have any concrete questions or error messages? Cheers, Bjoern Am 17.07.2014 04:10, schrieb 王渭巍: Hi, Bjoern Would you share your procedure to make some tools to run on a cluster. I have tried https://wiki.galaxyproject.