On Fri, Aug 22, 2014 at 9:39 AM, Marija Atanaskovic
ma...@unimelb.edu.au wrote:
Mira doesn’t work on Galaxy. This is the log message I receive.
Tool: Assemble with MIRA v3.4
Name: MIRA log
Created: Fri Aug 22 00:24:38 2014 (UTC)
Filesize: 0 bytes
Dbkey: ?
Format: txt
Galaxy Tool Version:
Yes sorry about this - Eric reported this same problem this week.
bioblend is not using API endpoints to download datasets and this is a
problem for proxies with REMOTE_USER configured since most such
proxies are only configured to allow through requests on /api and this
is definitely not the
Hi John,
We resolved the toolshed download issue by adding an entry for https_proxy
in our /etc/environment file.
Thanks for all your help.
Audrey
On Wed, Aug 20, 2014 at 5:55 PM, audrey michel audreymann...@gmail.com
wrote:
Hi John,
We also tried adding the proxy server ip address as
On Aug 20, 2014, at 3:53 AM, Matthias Enders m.end...@german-seed-alliance.de
wrote:
Hi,
I have a question regarding the user authentication of Galaxy.
As to my knowledge galaxy uses http, also for the authentication, so the User
Email and the password are send in clear text.
As I
On Aug 21, 2014, at 3:48 PM, Michael Ta m...@pacificdx.com wrote:
Hi,
I updated a local Galaxy installation a while back and I followed the steps
listed on one of the wiki pages. The update included changes to the database
schema and I was careful to backup and restore it according to the
Hi Nate,
I'm thinking I misread the documentation on the restore part. What happened
was I pulled and updated that galaxy-dist repository and then when I got it
running after migrating the tools and updating the database schema to the
new version, it either didn't display my previous histories or
On Fri, Aug 22, 2014 at 8:18 PM, Marija Atanaskovic
ma...@unimelb.edu.au wrote:
Hi Peter,
I don¹t know what the stdout and stderr information was. I click on it but
nothing comes up.
I installed from the main toolshed:
http://toolshed.g2.bx.psu.edu/view/peterjc/mira_assembler
Yes, I did
On Fri, Aug 22, 2014 at 8:00 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Fri, Aug 22, 2014 at 9:39 AM, Marija Atanaskovic
ma...@unimelb.edu.au wrote:
Also I can’t install Mira 4. This is the message I receive.
Any suggestions.
Getting Internal Server Error is unhelpful - I can't
We are about to implement a fasta database (file) versioning system as a Galaxy
tool. I wanted to get interested people's feedback first before we roll ahead
with the prototype implementation. The versioning system aims to:
* Enable reproducible research: To recreate a search result at a
Hi Peter,
Thanks for your response and for the advice from the other subscribers. I
am not the site administrator, but I have passed on all the email
correspondence to the administrators. I am a “wet-lab” scientist who
wanted to use the programme for my work. That is why I use Galaxy as the
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