Hello Galaxy Team!
I've set up a vanilla CloudMan instance using AWS. I've set the head node to
not handle jobs and have set AutoScaling to a minimum of 0 and a maximum of 4
worker nodes.
Upon submitting a job, it fails with the following error: Unable to run this
job due to a cluster error,
Hi Peter, all,
I've added post in both places as an option.
So far we only have two responses ...
Thanks,
Dave C
On Wed, Oct 8, 2014 at 1:16 AM, Peter Cock
wrote:
> On Wed, Oct 8, 2014 at 12:49 AM, Dave Clements
> wrote:
> > Hi All,
> >
> > The October Galaxy newsletter went out a week ag
Hi Dannon
Yes. The database is running on a different server from the server
running Galaxy. They are both VMs running Centos (6.5 on the Galaxy
server, 6.2 on the database server). The postgres version is 8.4.9 and
the database size is 712,161,040. I suspect that is not very large
compared to
On Wed, Oct 8, 2014 at 9:22 AM, Peter Cock wrote:
> Hi all,
>
> From the "new tools" information Dave Compiled for the last Galaxy Update
> https://wiki.galaxyproject.org/GalaxyUpdates/2014_10#ToolShed_Contributions
> I had a look at galaxyp's "filter_by_fasta_ids: Extract sequences from a
> FASTA
OK good - my issue with the ToolShed work now too :)
On Wed, Oct 8, 2014 at 11:44 AM, Stef van Lieshout
wrote:
> Ok, works for me again. Just a little hiccup I guess...
>
> Stef
>
> - Original message -
> From: Peter Cock
> To: Stef van Lieshout
> Cc: Galaxy Dev
> Subject: Re: [galaxy-
Ok, works for me again. Just a little hiccup I guess...
Stef
- Original message -
From: Peter Cock
To: Stef van Lieshout
Cc: Galaxy Dev
Subject: Re: [galaxy-dev] testtoolshed internal server error
Date: Wed, 8 Oct 2014 11:33:36 +0100
On Wed, Oct 8, 2014 at 11:20 AM, Stef van Lieshout
On Wed, Oct 8, 2014 at 11:20 AM, Stef van Lieshout
wrote:
> Anyone else getting this when trying to upload to a testtoolshed repos?
> I'm using the "upload files to repository" function in "repository
> actions" and get a blank page with "internal server error".. Worked fine
> yesterday.
>
> Ciao,
Hi again Ulf,
Thanks for the info. A few questions to help me track this down:
Does the postgres database reside on a remote box from galaxy? And is it
very large?
Running the latest galaxy may not change anything related to this
particular issue, but you could always try it.
Sqlalchemy is fix
Anyone else getting this when trying to upload to a testtoolshed repos?
I'm using the "upload files to repository" function in "repository
actions" and get a blank page with "internal server error".. Worked fine
yesterday.
Ciao,
Stef
___
Plea
Hi all again
Seems I am not so fortunate that this would just go away.
It appear to be happening sometimes at start-up time for one of the
handler processes. The first thing that appears to go wrong is this just
after starting the job handler queue:
---
galaxy.jobs.handler INFO 2014-10-06 14:
Hi all,
>From the "new tools" information Dave Compiled for the last Galaxy Update
https://wiki.galaxyproject.org/GalaxyUpdates/2014_10#ToolShed_Contributions
I had a look at galaxyp's "filter_by_fasta_ids: Extract sequences from a
FASTA file based on a list of IDs" tool:
https://toolshed.g2.bx.p
On Wed, Oct 8, 2014 at 12:49 AM, Dave Clements
wrote:
> Hi All,
>
> The October Galaxy newsletter went out a week ago. Buried at the bottom is
> this
>
> 36 new ToolShed repos
--> https://wiki.galaxyproject.org/GalaxyUpdates/2014_10#ToolShed_Contributions
> which lists repositories that have be
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