Re: [galaxy-dev] ToolShed error: samtools installation failure

2014-08-06 Thread Beginner TI
e shown up in a > terminal somewhere when you ran your galaxy instance after the update that > will contain a reference to script(s) that you can run that'll take care of > the migration. > > Let me know if you need more information, if the wiki page doesn't clear >

Re: [galaxy-dev] ToolShed error: samtools installation failure

2014-08-06 Thread Beginner TI
re sending duplicate emails to the list asking for assistance. > > That said, does deleting your integrated_tool_panel.xml (this file is > automatically regenerated by Galaxy, safe to remove it and restart) bring > back your manually installed samtools? > > > On Wed, Aug 6,

[galaxy-dev] ToolShed error: samtools installation failure

2014-08-06 Thread Beginner TI
Could someone please take a look? Thanks, Rui On Tue, Aug 5, 2014 at 8:27 PM, Beginner TI wrote: > Dear Admin, > > Since the upgrade, I lost the samtools that I installed myself. Although > it is still in the tool_conf.xml, it does not show up on the panel. I tried > to instal

[galaxy-dev] samtools installation error

2014-08-05 Thread Beginner TI
Dear Admin, Since the upgrade, I lost the samtools that I installed myself. Although it is still in the tool_conf.xml, it does not show up on the panel. I tried to install from toolshed, but failed. Error messages pasted below. Could someone take a look? Thanks, Rui ⇝ AttributeError: 'NoneType'