I downloaded the latest galaxy-dist this morning and I used the test toolshed
to test my repository first before I upload it to the main toolshed.
Thanks
Birgit Crain, Ph.D. | Sr. Professional Services Scientist | Complete Genomics,
Inc.
(650) 428-6023 office | (408) 605-3938 mobile
bcr
Thanks, greatly appreciated!
Birgit Crain, Ph.D. | Sr. Professional Services Scientist | Complete Genomics,
Inc.
(650) 428-6023 office | (408) 605-3938 mobile
bcr...@completegenomics.commailto:bcr...@completegenomics.com
From: Scott McManus scottmcma...@gatech.edumailto:scottmcma
Hi
I'm writing a tools for an executable that writes results to stdout and reports
success message to stderr, so it really need the improved error handling. Is
there any sample code or documentation available?
Thanks
Birgit Crain, Ph.D. | Sr. Professional Services Scientist | Complete
brief I understood that you can now add code to the xml to
check the stdout and std error for messages and I was wondering if you have
any documentation or sample code for that in any published tool.
Thanks
Birgit Crain, Ph.D. | Sr. Professional Services Scientist | Complete Genomics,
Inc
the same tar ball there, none of the tools loaded properly.
Hope this helps.
Birgit Crain, Ph.D. | Sr. Professional Services Scientist | Complete Genomics,
Inc.
(650) 428-6023 office | (408) 605-3938 mobile
bcr...@completegenomics.commailto:bcr...@completegenomics.com
From: Birgit Crain
bcr
instance on our server the tools and
.loc file install fine (except that I don't have my datatypes defined right,
working on that).
Birgit Crain, Ph.D. | Sr. Professional Services Scientist | Complete Genomics,
Inc.
(650) 428-6023 office | (408) 605-3938 mobile
bcr...@completegenomics.commailto:bcr
is show this explanation:
[Errno 2] No such file or directory:
'/var/opt/galaxy/g2cmnty/tmp/work_tmp/cg_crr_files.loc'
But I know the file is there …. Any suggestions? - I attached the tar ball for
a closer look.
Thanks
Birgit Crain, Ph.D. | Sr. Professional Services Scientist | Complete Genomics
Hi
I'm developing tools that use an entry in the tool_data_table_config.xml file.
For upload into a repository I created a tool_data_table_config.xml.sample file
with the corresponding table entry. The structure for the file I copied from
the tool_data_table_config.xml. in the galaxy
From: Greg Von Kuster g...@bx.psu.edumailto:g...@bx.psu.edu
Date: Tuesday, June 12, 2012 1:18 PM
To: Birgit Crain
bcr...@completegenomics.commailto:bcr...@completegenomics.com
Cc: galaxy-dev@lists.bx.psu.edumailto:galaxy-dev@lists.bx.psu.edu
galaxy-dev@lists.bx.psu.edumailto:galaxy-dev
