Genetics tools and velvetg:
>
> /tools/rgenetics/
> tools/sr_assembly/velvetg
>
> Best,
> J.
>
> On Jul 26, 2012, at 8:22 AM, Brian Haas wrote:
>
> Greetings,
>
> I have a process that is going to generate dozens of output files,
> each of which I want
Greetings,
I have a process that is going to generate dozens of output files,
each of which I want to retain as a data repository that will be
leveraged by other downstream tools. I could just point the
downstream tool at the directory, and it'll know what to look for,
rather than to have to list
Thanks Brad and Nicole! This definitely explains it. The stderr
(which almost all my tools generate for monitoring purposes) was
resulting in galaxy thinking the process failed.
All is well and good now. HUGE THANKS!
-brian
On Fri, Jul 20, 2012 at 1:53 PM, Nicole Rockweiler
wrote:
> H
Hi,
I wrote a pipeline (xml attached) that, from what I can gather,
succeeds, but galaxy shows it as an error and doesn't make the output
file accessible as a new data set.
>From the server log, I can see that the command line is being
constructed correctly, and it even indicates that it's captur
Excellent. Thanks, Jeremy!
-b
On Fri, Jul 20, 2012 at 8:37 AM, Jeremy Goecks wrote:
> Brian,
>
> For the
> initial trinity de novo assembly, I took Jeremy's initial workflow and
> tweaked it to work with the latest release - and submitted it to the
> galaxy tool shed.
>
>
> Excellent. I'll remo
Greetings all,
I'm trying to build out a Galaxy workflow to support trinity rna-seq
de novo assembly and all the various downstream analyses. For the
initial trinity de novo assembly, I took Jeremy's initial workflow and
tweaked it to work with the latest release - and submitted it to the
galaxy
